Semantic cluster achievements
The Big Picture
Activities (period 1, 2, 3)
|
Task id |
Task name |
WP/Task |
Achieved |
Lead |
Data sources / Dependencies |
Next data sources |
Technology |
Period |
Priority |
Difficulty |
|
A- RDF HARMONIZATION AND MAPPING |
||||||||||
|
A-1 |
iMarine Top Level Ontology Definition |
T3.3 |
Ongoing |
FORTH FAO IRD |
FLOD schema and Ecoscope schema and CIDOC ?? |
DC, FOAF, GENESI-DEC, .. ?? |
Discussions |
1,2,3 |
+++ |
+++ |
|
A-2 |
iMarine TLO RDF Schema |
T3.3 |
Ongoing |
FORTH |
??? |
|
RDF / OWL |
1,2,3 |
+++ |
??? |
|
A-3 |
FLOD and TLO mapping |
T3.3 |
NO |
FAO |
??? |
|
?? |
2 |
+++ |
+ |
|
A-4 |
Ecoscope and TLO mapping |
T3.3 |
NO |
IRD |
DC, FOAF, GENESI-DEC, SKOS, ICAL |
|
RDF / OWL |
2 |
+++ |
+ |
|
B- RDF GENERATION FROM DATA SOURCES |
||||||||||
|
B-1 |
FLOD Knowledge Base |
|
YES |
FAO |
CSV, Publications, ??? |
??? Smartfish?? |
Java |
1 |
++ |
+++ |
|
B-2 |
Ecoscope Knowledge Base |
|
YES |
IRD |
Relationnal databases, pictures, agents, publications, spatial information.. |
Bibliographic references (B-3), new databases. |
Java, Php |
1 |
++ |
+++ |
|
B-3 |
iMarine annotator (similar as D-11 without GUIS) |
|
NO |
FORTH |
* IRD bibliographic references (RDF export from ZOTERO) * IRD reports, pdf and doc files without bibliographic references, *FAO ? |
* external bibliographic references from partners (RFMOS, ...) |
FORTH entity mining application |
2 |
+++ |
??? |
|
B-4 |
iMarine Knowledge Base |
WP3, WP10, and …WPXXX |
NO |
CNR (who ?) FORTH ? |
* Geonetwork metadata of Geospatial cluster, * Species Browser / Manager * Codelist manager, |
|
Terradue XSL (GENESI-DEC RDF schema) TLO RDF schema |
2,3 |
+++ |
??? |
|
C- RDF STORAGE AND ACCESS |
||||||||||
|
C-1 |
FLOD triple store & SPARQL endpoint |
|
YES |
FAO |
RDF from B-1, B-3 |
|
Quad store (TDB), Joseki |
1 |
++ |
++ |
|
C-2 |
Ecoscope triple store & SPARQL endpoints |
|
YES |
IRD |
RDF from B-2, B-3 |
|
Triple store (TDB), Joseki |
1 |
++ |
++ |
|
C-3 |
iMarine triple store & SPARQL endpoint |
|
NO |
CNR ? |
RDF from B-4, B-3 |
|
Java, Jena, Quad store (TDB), Joseki |
2 |
+++ |
+ |
|
C-4 |
FLOD opensearch |
|
Ongoing |
FAO |
RDF from C-1 |
|
|
1 |
++ |
|
|
C-5 |
Ecoscope opensearch |
|
YES |
IRD |
RDF from C-2 |
|
Java |
1 |
++ |
|
|
C-6 |
iMarine opensearch |
|
NO |
CNR ? |
RDF from C-3 |
|
Java |
3 |
+++ |
|
|
C-7 |
XSearch configurability (OpenSearch, categories, SPARQL endpoints) |
T10.4 |
Yes |
FORTH |
|
|
Java, JSP |
1 |
|
|
|
C-8 |
XSearch over gCube Search (exploits iMarine resutls) |
T10.4 |
Yes |
FORTH, NKUA |
gCubeSearch |
|
Java, JSP, GWT |
1 |
|
|
|
C-9 |
XSearch 1s portlet version (supports snippets-title entity mining/clustering) |
T10.4 |
Yes |
FORTH, NKUA |
gCubeSearch, C-11 |
|
Java, JSP, GWT |
1 |
|
|
|
C-10 |
XSearch 2nd portlet verion (Exploitation of LinkedData) |
T10,4 |
No |
FORTH, NKUA,CNR, FAO, IRD |
gCubeSearch, C-11, C-3 |
|
Java, JSP, GWT |
2 |
|
|
|
C-11 |
XSearch as a service (deployed in iMarine infrastructure) |
WP10, WP11 |
Yes |
FORTH |
NKUA APIs |
|
JAVA, JSP |
1 |
|
|
|
C-12 |
XSearch and gCubeSearch (various issues) |
WP10, WP11 |
Ongoing |
FORTH, NKUA |
|
|
|
2,3 |
+++ |
+++ |
|
C-13 |
XSearch that exploits objects associations (TLO-connected) |
|
|
|
|
|
|
2,3 |
|
|
|
D- RDF CLIENTS |
||||||||||
|
D-1 |
Bookmarklet: hihglighting of terms with FLOD SPARQL endpoint |
T10.4 |
YES |
FORTH |
Any terms in Web pages related to concepts described with C-1 & C-2 & C-3 |
|
? & FORTH entity mining |
1 |
+ |
??? |
|
D-2 |
FLOD search engine |
|
YES |
FAO |
C-1 & C-4 |
|
??? |
1 |
+ |
+ |
|
D-3 |
Ecoscope search engine |
|
YES |
IRD |
C-2 & C-5 |
|
Home made |
1 |
+ |
|
|
D-4 |
XSearch over FIGIS search system |
T10.4 |
YES |
FORTH |
C-1 & C-4 |
|
? & FORTH entity mining |
1 |
++ |
+ |
|
D-5 |
XSearch over Ecoscope search system using OpenSearch |
T10.4 |
YES |
FORTH |
C-2 & C-5 |
|
Opensearch html & FORTH entity mining |
1 |
++ |
+ |
|
D-6 |
Exploiting in XSearch the URIs of the results provided directly by Ecoscope search system |
|
NO |
FORTH |
C-3 & C-6 |
|
Opensearch RDF & FORTH entity mining |
2,3 |
+++ |
+ |
|
D-7 |
iMarine search engine (see a possible scenario here) |
|
NO |
FORTH |
C-3 & C-6, C-2 & C-5, C-1 & C-4 |
|
|
2,3 |
+++ |
??? |
|
D-8 |
Fact sheet demonstrator on top of Ecoscope and FLOD |
|
YES |
IRD |
|
|
Javascript |
1 |
+ |
++ |
|
D-9 |
D-8 with TLO |
|
NO |
IRD FAO |
Depends on A-3 & A-4 |
|
?? |
2 |
++ |
++ |
|
D-10 |
Imarine fact sheet generator with TLO |
|
YES |
IRD FAO |
C-3 & C-6, C-2 & C-5, C-1 & C-4 |
|
?? |
3 |
+++ |
++ |
|
D-11 |
iMarine tagger (like Agrotagger), similar as B-3 with GUIS (reusing D-1). |
?T10.4 |
NO |
CNR (VREVirtual Research Environment.?) FORTH |
Any PDF or DOC file, Zotero RDF export.. tagging with with C-1 & C-2 & C-3. |
Other kinds of data formats ? |
FORTH entity mining. VREVirtual Research Environment.? |
2 |
++ |
+ |
|
D-12 |
iMarine match entities service (cf WoRMS "match taxa") |
|
NO |
IRD CNR (VREVirtual Research Environment.?) |
FLOD SPARQL endpoint Ecoscope SPARQL endpoint |
iMarine SPARQL endpoint |
Java / Jena. VREVirtual Research Environment.? |
2,3 |
++ |
+ |
|
|
VREVirtual Research Environment.’s for the semantic cluster ? |
|
|
|
|
|
|
|
|
|
End User Products
The following table is end user-based. It should provide details and links to the products which can be demonstrated. It concerns the entire duration of the project.
| Name | Description | Links | Status | Next Steps |
| XSearch | See the wiki page http://wiki.i-marine.eu/index.php/XSearch | see the wiki page for links to running prototypes | see the wiki page for status information | see the wiki page (there should be tickets there) |
| Fact sheet generator | Fact sheet generator of Ecoscope used on top of both Ecoscope and FLOD SPARQL endpoints. In this demo, Ecoscope is collecting taxon ranks from Worms made available by FLOD through a SPARQL query | Ecoscope fact sheet example | First step | Same demo with a SPARQL query using TLO classes and properties. |
| OpenSearch on top of Ecoscope: HTML and RDF results | In order to enable Ecoscope metadata to be harvested by other applications. Ecoscop enabled OpenSearch Queries and sends back either HTML or RDF results | Ecoscope OpenSearch Query example: HTML results & RDF results (using GENESI-DEC RDF schema) | First step by enablin Xsearch over Ecoscope with HTML results and entity mining. Next step with RDF results and URIs in addition to entity mining. | Same demo with a SPARQL query using TLO classes and properties. |
| TLO | TLO Development Activity | http://wiki.i-marine.eu/index.php/Top_Level_Ontology | see the wiki page for more details | Next StepsX |
| XSearchLink | A kind of tagger (details at http://wiki.i-marine.eu/index.php/XSearchLink) | see the wiki page for more details | On Requirements Phase | Next StepsX |
| NameX | DescriptionX | LinksX | StatusX | Next StepsX |
Products to be Demonstrated in the 2nd Review
A separate page dedicated to the needs of the 2nd review is:
