EuBrazilOpenBIO VO 2.15.0

gHN Upgrade Instructions

The upgrade to the latest version of GHNgCube Hosting Node. (v 3.7.1) and gCube (2.15.0) requires Site Manager to apply the following upgrade istructions

Clean and upgrade

• Clean and upgrade to GHNgCube Hosting Node. v 3.7.1 using the following instructions

EUBrazilOpenBIO VOVirtual Organization;

EUBrazilOpenBIO VOVirtual Organization;/VREVirtual Research Environment. Services (7 Jun PM)

gHNs to clean following the instructions:

• (CNR) : node77.p.d4science.research-infrastructures.eu:8080

Services to instal

• (CNR) : node77.p.d4science.research-infrastructures.eu:8080: deploy Species Product Discovery and plugins

Portal

• a patch for HomeLibrary should be provided in order to use the iMarine simmetric key
• OpenBIO portlets not released in gCube must be installed.

• Packages have be downloaded from the BTRT instance@ENG http://grids16.eng.it/BuildReport/browse/Recent_Builds/org.gcube.2-15-0

Portlets to upgrade

• org.gcube.messaging.accounting-portlet.1-8-0
• org.gcube.portlets-user.notifications.0-2-0
• org.gcube.portlets-user.newsfeed-1-0-0
• org.gcube.portlets-user.shareupdates.0-4-0
• org.gcube.portlets-user.gcube-loggedin-portlet.2-0-0
• org.gcube.portlets-user.workspace-portlet.6-2-0
• org.gcube.portlets-user.species-discovery.3-2-0
• org.gcube.portlets-admin.users-management-portlet.1-8-1
• org.gcube.portlets-admin.resource-management-portlet.4-1-0
• org.gcube.portlets-admin.vre-definition.4-0-0
• org.gcube.portlets-admin.vre-deployer.1-6-0
• org.gcube.portlets-admin.vre-deployment.4-0-0
• org.gcube.portlets-admin.runtime-resource-creator.1-3-0
• org.gcube.portlets-user.template-creator.4-2-0
• org.gcube.portlets-user.report-generator-portlet.4-3-0
• org.gcube.portlets-user.geoexplorer-portlet.2-1-0

Given the name changes, layouts must also be revised to add the new portlet

Libraries

Libraries to be deployed under $GLOBUS_LOCATION/lib/_ext

• common-clients.2.0.2
• org.gcube.portlets-admin.rmp-common-library.1-2-0
• org.gcube.portlets-admin.activation-record-widget-1.1.0
• org.gcube.messaging.consumer-library.2-0-0
• org.gcube.content-management.storage-resource-link-plugin.1-0-1
• geonetwork.1-0-1
• org.gcube.contentmanagement.storage-manager-wrapper.2.0.1
• org.gcube.content-management.storage-manager-core.2.0.1
• org.gcube.content-management.timeseries-client-library.1-0-1
• org.gcube.content-management.timeseries-stubs-2-4-2
• org.gcube.portlets-user.GISViewer.3-1-0
• spql-parser.2-0-0
• spd-client-library.3-0-0
• spd-model-library.2-0-1
• occurrence-reconciliation.1-0-2
• org.gcube.data-analysis.ecological-engine.1.6.1
• org.gcube.portlets-user.geoexplorer.2-2-0
• org.gcube.portlets-user.gcube-geoexplorer.2-2-0
• org.gcube.portlets-admin.document-workflow-library.1-3-0

Libraries to be deployed under $GLOBUS_LOCATION/lib/

• org.gcube.messaging.messages.1-6-0
• org.gcube.messaging.producer.1-1-0
• common-gcore-resources-1.0.1
• org.gcube.common.common-encryption.1-0-0
• common-configuration-scanner.1.0.0
• common-scope.1-2-0
• discovery-client-1.0.1
• gcf.1.6.1

Libraries to be deployed under $GLOBUS_LOCATION/lib/_social-library/

• org.gcube.portal.social-networking-library.1-1-0

Libraries to be deployed under $GLOBUS_LOCATION/lib/_home-library

• org.gcube.portlets-user.home-library.4-5-1
• org.gcube.portlets-user.home-library-jcr.1-5-1
• org.gcube.portlets-user.workspace-portlet-tree.6-2-0

Libraries to be deployed under $GLOBUS_LOCATION/lib/_application-support-layer

• org.gcube.application-support-layer.social.0-3-0
• org.gcube.application-support-layer.application-support-layer-vremanagement.3-7-0
• org.gcube.application-support-layer.application-support-layer-core.3-3-0

Third Party Libraries

• eclipselink-2.4.1
• commonj.sdo-2.1.1.v201112051852
• javax.persistence-2.0.4.v201112161009
• h2-1.3.166
• geoapi-3.0.0
• geotk-referencing-3.20-geoapi-3.0
• geotk-utility-3.20-geoapi-3.0
• geotk-metadata-3.20-geoapi-3.0
• geotk-xml-base-3.20-geoapi-3.0
• jsr-275-0.9.3
• vecmath-1.3.1
• jcip-annotations-1.0
• dom-2.3.0-jaxb-1.0.6
• geonetwork-manager-1.1.jar

old to remove from $GLOBUS_LOCATION/lib

• org.gcube.messaging.monitoring-probes.1-1-0