13.06.2014 BiolDiv
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Revision as of 11:03, 13 June 2014 by Nicolas.bailly (Talk | contribs) (Created page with "'''Meeting Friday 13 June 2014''' Present: Fabio (until 10:40), GP, Nicolas, Casey, Edward. ==Notes== ===WPS=== * OGC protocol: specifications for processing. Used by Terradue...")
Meeting Friday 13 June 2014
Present: Fabio (until 10:40), GP, Nicolas, Casey, Edward.
Notes
WPS
- OGC protocol: specifications for processing. Used by Terradue and IRD.
- xml-based interface: accept REST requests. Output in xml format following xsd.
- Developed for BiOnym asking to Taverna staff to check for coherence. Some adjustment were necessary but works now for Taverna workflow.
- To be used by FishBase in August 2014 version. To be compared with the call of API in the Statistical Manager.
- Catalogue of WPS services available in the infrastructure: [[1]http://wps.statistical.d4science.org/wps/WebProcessingService?service=WPS&Request=GetCapabilities] which is read by WPS indexing engines.
- Index BiOnym in MyExperiment for Taverna users after one week to let Anton, Edward and Nicolas checking the political issues to be indexed in MyExperiment.
- Ask Tony Rees, Yde de Jong, GBIF people, more? to check the interface (Nicolas, Edward).
BiOnym Interface
- Ticket sent by Fabio.
- Casey replied Friday morning and uploaded the corrections as version 5 (another subversion to be sent by Casey after integration of 2 matchers by default, see below).
- Just an issue on double quotes around scientific names to be fixed.
- Decision on matchers by default: GSAy first, TriGrams second. Let's start with that default and test.
- Computing capacity for BiOnym: 16 synchronous requests are possible. Should be enough even if there are heavy requests (big files, several TAFs).
Paper
- Integration of latest corrections.
- Submission to day.
- Few days for light review by CNR publishers and then published.
- Discussion on most likely journals (expensive options like PLosOne discarded):
- Biological paper: target Biodiversity Informatics (Nicolas to check BioMed journals).
- Informatics paper: target Ecological modelling (less Ecography).
Next meeting
Friday 20th June 2014, 10 am, changed from Thursday due to Holiday (again!) in the Philippines on 19th.