Difference between revisions of "Semantic cluster achievements"

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__FORCETOC__
  
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== The Big Picture ==
  
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[[File:summary_of_work.svg|700px|thumb|left|frame|Overview of the main steps, enlarge to get full size schema]]
  
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== Details of activities ==
 
  
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[[File:summary_of_work.svg|700px|thumb|left|Overview of the main steps, enlarge to get full size schema]]
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<br/>
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== Activities (period 1, 2, 3)  ==
  
  
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<TD COLSPAN=11 WIDTH=1064 VALIGN=TOP bgcolor="#FFFF00">
 
<P ALIGN=CENTER><B>A-    RDF HARMONIZATION AND
 
<P ALIGN=CENTER><B>A-    RDF HARMONIZATION AND
 
MAPPING</B></P>
 
MAPPING</B></P>
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<TD COLSPAN=11 WIDTH=1064 VALIGN=TOP bgcolor="#FFFF00">
 
<P ALIGN=CENTER><B>B-    RDF GENERATION FROM DATA
 
<P ALIGN=CENTER><B>B-    RDF GENERATION FROM DATA
 
SOURCES</B></P>
 
SOURCES</B></P>
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<TD COLSPAN=11 WIDTH=1064 VALIGN=TOP bgcolor="#FFFF00">
 
<P ALIGN=CENTER><B>C-    RDF STORAGE AND ACCESS</B></P>
 
<P ALIGN=CENTER><B>C-    RDF STORAGE AND ACCESS</B></P>
 
</TD>
 
</TD>
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<TD COLSPAN=11 WIDTH=1064 VALIGN=TOP bgcolor="#FFFF00">
 
<P ALIGN=CENTER><B>D-    RDF CLIENTS</B></P>
 
<P ALIGN=CENTER><B>D-    RDF CLIENTS</B></P>
 
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</TD>
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<P><FONT COLOR="#0000ff">Eoscope</FONT> search
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<P><FONT COLOR="#0000ff">Ecoscope</FONT> search
 
engine</P>
 
engine</P>
 
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</TD>
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<TD WIDTH=104>
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<P><FONT COLOR="#0000ff">xSearch</FONT> search
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<P><FONT COLOR="#0000ff">XSearch</FONT> over <FONT COLOR="#0000ff">FIGIS</FONT> search system</P>
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engine on <FONT COLOR="#0000ff">FLOD</FONT></P>
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<P><FONT COLOR="#0000ff">xSearch</FONT> search
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<P><FONT COLOR="#0000ff">XSearch</FONT> over <FONT COLOR="#0000ff">Ecoscope</FONT> search system using OpenSearch</P>
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engine on <FONT COLOR="#0000ff">Ecoscope</FONT> html opensearch</P>
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</TD>
 
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<TD WIDTH=69>
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</TD>
 
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<TD WIDTH=104>
 
<TD WIDTH=104>
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<P><FONT COLOR="#0000ff">xSearch</FONT> search
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<P>Exploiting in <FONT COLOR="#0000ff">XSearch</FONT> the URIs of the results provided directly by <FONT COLOR="#0000ff">Ecoscope</FONT> search system</P>
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engine on <FONT COLOR="#0000ff">iMarine</FONT> RDF opensearch</P>
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<P><FONT COLOR="#0000ff">iMarine</FONT> search
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<P><FONT COLOR="#0000ff">iMarine</FONT> search engine (see a possible scenario [http://wiki.i-marine.eu/index.php/XSearch#Executive_Summary_for_the_Next_Steps here])</P>
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engine</P>
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</TABLE>
 
</TABLE>
  
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== Data sources for RDF ==
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== End User Products  ==
 +
 
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The following table is end user-based.
 +
It should provide details and links to the products which can be demonstrated.
 +
It concerns the entire duration of the project.
 +
 
 +
{| class="wikitable"
 +
|+ style="color:#e76700;" |''List of demonstrations related with Semantic cluster endproducts''
 +
|-
 +
|Name
 +
|Description
 +
|Links
 +
|Status
 +
|Next Steps
 +
|-
 +
| XSearch
 +
| See the wiki page http://wiki.i-marine.eu/index.php/XSearch
 +
| see the wiki page for links to running prototypes
 +
| see the wiki page for status information
 +
| see the wiki page (there should be tickets there)
 +
|-
 +
|Fact sheet generator
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|Fact sheet generator of Ecoscope used on top of both Ecoscope and FLOD SPARQL endpoints. In this demo, Ecoscope is collecting taxon ranks from Worms made available by FLOD through a SPARQL query
 +
|[http://ecoscopebc.mpl.ird.fr/EcoscopeKB/ShowResource.action?resourceUri=http%3A%2F%2Fwww.ecoscope.org%2Fontologies%2Fecosystems%2Fthunnus_albacares&request_locale=en_EN Ecoscope fact sheet example]
 +
|First step
 +
|Same demo with a SPARQL query using TLO classes and properties.
 +
|-
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|OpenSearch on top of Ecoscope: HTML and RDF results
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|In order to enable Ecoscope metadata to be harvested by other applications. Ecoscop enabled OpenSearch Queries and sends back either HTML or RDF results
 +
|[http://www.ecoscopebc.ird.fr/EcoscopeKB/GetTabbedSearchResults.action?freeText=thunnus&forcedView=multi%23%23%23opensearchHtml&offset=0&limit=1000 Ecoscope OpenSearch Query example: HTML results] & [http://ecoscopebc.mpl.ird.fr/EcoscopeKB/GetOpensearchGenesiDec?freeText=thunnus RDF results] (using GENESI-DEC RDF schema)
 +
|First step by enablin Xsearch over Ecoscope with HTML results and entity mining. Next step with RDF results and URIs in addition to entity mining.
 +
|Same demo with a SPARQL query using TLO classes and properties.
 +
|-
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|TLO
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|TLO Development Activity
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|http://wiki.i-marine.eu/index.php/Top_Level_Ontology
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|see the wiki page for more details
 +
|Next StepsX
 +
|-
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|XSearchLink
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|A kind of tagger (details at http://wiki.i-marine.eu/index.php/XSearchLink)
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|see the [http://wiki.i-marine.eu/index.php/XSearchLink wiki page] for more details
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|On Requirements Phase
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|Next StepsX
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|-
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|NameX
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|DescriptionX
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|LinksX
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|StatusX
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|Next StepsX
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|}
  
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== Products to be Demonstrated in the 2nd Review ==
  
 +
A separate page dedicated to the needs of the 2nd review is:
  
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[[File:rdfization_LOD.svg|600px|thumb|left|Enlarge to get full size schema]]
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http://wiki.i-marine.eu/index.php/SemanticCluster2ndReview

Latest revision as of 10:23, 1 March 2013


The Big Picture

Overview of the main steps, enlarge to get full size schema




Activities (period 1, 2, 3)

Task id

Task name

WP/Task

Achieved

Lead

Data sources / Dependencies

Next data sources

Technology

Period

Priority

Difficulty

A- RDF HARMONIZATION AND MAPPING

A-1

iMarine Top Level Ontology Definition

T3.3

Ongoing

FORTH

FAO

IRD

FLOD schema and Ecoscope schema and CIDOC ??

DC, FOAF, GENESI-DEC, .. ??

Discussions

1,2,3

+++

+++

A-2

iMarine TLO RDF Schema

T3.3

Ongoing

FORTH

???


RDF / OWL

1,2,3

+++

???

A-3

FLOD and TLO mapping

T3.3

NO

FAO

???


??

2

+++

+

A-4

Ecoscope and TLO mapping

T3.3

NO

IRD

DC, FOAF, GENESI-DEC, SKOS, ICAL


RDF / OWL

2

+++

+

B- RDF GENERATION FROM DATA SOURCES

B-1

FLOD Knowledge Base


YES

FAO

CSV, Publications, ???

??? Smartfish??

Java

1

++

+++

B-2

Ecoscope Knowledge Base


YES

IRD

Relationnal databases, pictures, agents, publications, spatial information..

Bibliographic references (B-3), new databases.

Java, Php

1

++

+++

B-3

iMarine annotator (similar as D-11 without GUIS)


NO

FORTH

* IRD bibliographic references (RDF export from ZOTERO)

* IRD reports, pdf and doc files without bibliographic references,

*FAO ?

* external bibliographic references from partners (RFMOS, ...)

FORTH entity mining application

2

+++

???

B-4

iMarine Knowledge Base

WP3, WP10, and …WPXXX

NO

CNR (who ?)

FORTH ?

* Geonetwork metadata of Geospatial cluster,

* Species Browser / Manager

* Codelist manager,


Terradue XSL (GENESI-DEC RDF schema)

TLO RDF schema

2,3

+++

???

C- RDF STORAGE AND ACCESS

C-1

FLOD triple store & SPARQL endpoint


YES

FAO

RDF from B-1, B-3


Quad store (TDB), Joseki

1

++

++

C-2

Ecoscope triple store & SPARQL endpoints


YES

IRD

RDF from B-2, B-3


Triple store (TDB), Joseki

1

++

++

C-3

iMarine triple store & SPARQL endpoint


NO

CNR ?

RDF from B-4, B-3


Java, Jena, Quad store (TDB), Joseki

2

+++

+

C-4

FLOD opensearch


Ongoing

FAO

RDF from C-1



1

++


C-5

Ecoscope opensearch


YES

IRD

RDF from C-2


Java

1

++


C-6

iMarine opensearch


NO

CNR ?

RDF from C-3


Java

3

+++


C-7

XSearch configurability (OpenSearch, categories, SPARQL endpoints)

T10.4

Yes

FORTH



Java, JSP

1



C-8

XSearch over gCube Search (exploits iMarine resutls)

T10.4

Yes

FORTH, NKUA

gCubeSearch


Java, JSP, GWT

1



C-9

XSearch 1s portlet version (supports snippets-title entity mining/clustering)

T10.4

Yes

FORTH, NKUA

gCubeSearch, C-11


Java, JSP, GWT

1



C-10

XSearch 2nd portlet verion (Exploitation of LinkedData)

T10,4

No

FORTH, NKUA,CNR, FAO, IRD

gCubeSearch, C-11, C-3


Java, JSP, GWT

2



C-11

XSearch as a service (deployed in iMarine infrastructure)

WP10, WP11

Yes

FORTH

NKUA APIs


JAVA, JSP

1



C-12

XSearch and gCubeSearch (various issues)

WP10, WP11

Ongoing

FORTH, NKUA




2,3

+++

+++

C-13

XSearch that exploits objects associations (TLO-connected)







2,3



D- RDF CLIENTS

D-1

Bookmarklet: hihglighting of terms with FLOD SPARQL endpoint

T10.4

YES

FORTH

Any terms in Web pages related to concepts described with C-1 & C-2 & C-3


?

&

FORTH entity mining

1

+

???

D-2

FLOD search engine


YES

FAO

C-1 & C-4


???

1

+

+

D-3

Ecoscope search engine


YES

IRD

C-2 & C-5


Home made

1

+


D-4

XSearch over FIGIS search system

T10.4

YES

FORTH

C-1 & C-4


?

&

FORTH entity mining

1

++

+

D-5

XSearch over Ecoscope search system using OpenSearch

T10.4

YES

FORTH

C-2 & C-5


Opensearch html

&

FORTH entity mining

1

++

+

D-6

Exploiting in XSearch the URIs of the results provided directly by Ecoscope search system


NO

FORTH

C-3 & C-6


Opensearch RDF

&

FORTH entity mining

2,3

+++

+

D-7

iMarine search engine (see a possible scenario here)


NO

FORTH

C-3 & C-6, C-2 & C-5, C-1 & C-4



2,3

+++

???

D-8

Fact sheet demonstrator on top of Ecoscope and FLOD


YES

IRD



Javascript

1

+

++

D-9

D-8 with TLO


NO

IRD

FAO

Depends on A-3 & A-4


??

2

++

++

D-10

Imarine fact sheet generator with TLO


YES

IRD

FAO

C-3 & C-6, C-2 & C-5, C-1 & C-4


??

3

+++

++

D-11

iMarine tagger (like Agrotagger), similar as B-3 with GUIS (reusing D-1).

?T10.4

NO

CNR (VREVirtual Research Environment.?)

FORTH

Any PDF or DOC file, Zotero RDF export..

tagging with with C-1 & C-2 & C-3.

Other kinds of data formats ?

FORTH entity mining.

VREVirtual Research Environment.?

2

++

+

D-12

iMarine match entities service (cf WoRMS "match taxa")


NO

IRD

CNR (VREVirtual Research Environment.?)

FLOD SPARQL endpoint

Ecoscope SPARQL endpoint

iMarine SPARQL endpoint

Java / Jena.

VREVirtual Research Environment.?

2,3

++

+


VREVirtual Research Environment.’s for the semantic cluster ?










End User Products

The following table is end user-based. It should provide details and links to the products which can be demonstrated. It concerns the entire duration of the project.

List of demonstrations related with Semantic cluster endproducts
Name Description Links Status Next Steps
XSearch See the wiki page http://wiki.i-marine.eu/index.php/XSearch see the wiki page for links to running prototypes see the wiki page for status information see the wiki page (there should be tickets there)
Fact sheet generator Fact sheet generator of Ecoscope used on top of both Ecoscope and FLOD SPARQL endpoints. In this demo, Ecoscope is collecting taxon ranks from Worms made available by FLOD through a SPARQL query Ecoscope fact sheet example First step Same demo with a SPARQL query using TLO classes and properties.
OpenSearch on top of Ecoscope: HTML and RDF results In order to enable Ecoscope metadata to be harvested by other applications. Ecoscop enabled OpenSearch Queries and sends back either HTML or RDF results Ecoscope OpenSearch Query example: HTML results & RDF results (using GENESI-DEC RDF schema) First step by enablin Xsearch over Ecoscope with HTML results and entity mining. Next step with RDF results and URIs in addition to entity mining. Same demo with a SPARQL query using TLO classes and properties.
TLO TLO Development Activity http://wiki.i-marine.eu/index.php/Top_Level_Ontology see the wiki page for more details Next StepsX
XSearchLink A kind of tagger (details at http://wiki.i-marine.eu/index.php/XSearchLink) see the wiki page for more details On Requirements Phase Next StepsX
NameX DescriptionX LinksX StatusX Next StepsX

Products to be Demonstrated in the 2nd Review

A separate page dedicated to the needs of the 2nd review is:

http://wiki.i-marine.eu/index.php/SemanticCluster2ndReview

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