Upgrade Plan 300 Ecosystem

Ecosystem VOVirtual Organization;

GHNs

• Clean and upgrade to GHNgCube Hosting Node. v 4.0.0 using the following instructions

GHNs:

• DONE node7.p.d4science.research-infrastructures.eu:8080
• DONE node10.p.d4science.research-infrastructures.eu:8080
• DONE node13.p.d4science.research-infrastructures.eu:8080
• DONE node20.p.d4science.research-infrastructures.eu:8080
• DONE node22.p.d4science.research-infrastructures.eu:8080
• DONE node31.p.d4science.research-infrastructures.eu:8080
• DONE node40.p.d4science.research-infrastructures.eu:8080
• DONE node55.p.d4science.research-infrastructures.eu:8080
• DONE node56.p.d4science.research-infrastructures.eu:8080
• DONE node57.p.d4science.research-infrastructures.eu:8080
• DONE dl19.di.uoa.gr:8080
• DONE dl20.di.uoa.gr:8080
• DONE dewn07.madgik.di.uoa.gr:8080
• DONE dl27.di.uoa.gr:8080
• DONE dl28.di.uoa.gr:8080

GHNgCube Hosting Node. to install:

• DONE dl18.di.uoa.gr:8080

SMARTGEARS

• DONE node56.p.d4science.research-infrastructures.eu:8000
• DONE node51.p.d4science.research-infrastructures.eu:8080

gCore Services

• DONE node10.p.d4science.research-infrastructures.eu:8080: Install IS-Collector
  • Manual installation from : https://gcube.wiki.gcube-system.org/gcube/index.php/Information_System_Installation#IS-Collector
• DONE node7.p.d4science.research-infrastructures.eu:8080: install IS-Registry, IS-Notifier
  • mannual installation from https://gcube.wiki.gcube-system.org/gcube/index.php/Information_System_Installation#IS-Registry and https://gcube.wiki.gcube-system.org/gcube/index.php/Information_System_Installation#IS-Notifier
• DONE node40.p.d4science.research-infrastructures.eu:8080: install Software Gateway
  • manual installation from https://gcube.wiki.gcube-system.org/gcube/index.php/VRE_Management_Installation#Software_Gateway
• DONE node22.p.d4science.research-infrastructures.eu:8080: install VREModeler
  • manual installation from https://gcube.wiki.gcube-system.org/gcube/index.php/VRE_Management_Installation#VREModeler
• DONE dl19.di.uoa.gr:8080: install ResourceManager, ResourceBroker
  • manual installation from https://gcube.wiki.gcube-system.org/gcube/index.php/VRE_Management_Installation#Resource_Manager and https://gcube.wiki.gcube-system.org/gcube/index.php/VRE_Management_Installation#Resource_Broker
• DONE node13.p.d4science.research-infrastructures.eu:8080: deploy FullTextIndexNode
  • Dynamic deployment from RM portlet: Class: Index, Name :ForwardIndexNode
• DONE node20.p.d4science.research-infrastructures.eu:8080: deploy TreeManager and OAI-TM plugin
  • Dynamic deplyment : Class :DataAccess, Name: tree-manager-service
• DONE dewn07.madgik.di.uoa.gr:8080: deploy Forward Index Node
  • Dynamic Deployment Class :Index, Name:ForwardIndexNode
  • previous jndi confifuration ( with username and pass of couchbase need to be restored)
• DONE node22.p.d4science.research-infrastructures.eu:8080: install Personalization services
  • dynamic deployment : Class: Personalisation, Name: UserProfileAccess and Class: Personalisation , Name: ProfileAdministration
• DONE node31.p.d4science.research-infrastructures.eu:8080 : install DataTransformation
  • dynamic deployment: Class: DataTransformation, Name DataTransformationService
  • org.gcube.execution.rrconfprovider-service.1-0-0 manual installation required
• DONEnode55.p.d4science.research-infrastructures.eu:8080: install Data Transfer Scheduler and Agent
  • Dynamic Deployment: Class : DataTransfer, Name agent-service: CLass DataTransfer, Name : scheduler-service
  • restored previous jndi file and db.properties for sheduler service
• DONEdl20.di.uoa.gr:8080: install Workflow
  • Dynamic Deployment : Class : Execution, Name WorkflowEngineService
• DONE dl27.di.uoa.gr:8080: OpenSearch , (SPD)
  • Dynamic Deployment: Class : OpenSearch, Name : OpenSearchDataSource
  • jvm should run with -noverify
• DONE dl28.di.uoa.gr:8080: Executor/Generic Worker
  • Dynamic Deployment : Class : GenericWorker, Name genericworker
• DONE node57.p.d4science.research-infrastructures.eu:8080: install UsageTracker
  • https://gcube.wiki.gcube-system.org/gcube/index.php/Usage_Tracker_Installation
• node56.p.d4science.research-infrastructures.eu:8080: install Aquamaps

• dl18.di.uoa.gr:8080 : Statistical Manager

Webapps

• DONE node51.p.d4science.research-infrastructures.eu:8080: Install Search , and Execution Engine
  • wars deployment and manaual configuration:
  • https://gcube.wiki.gcube-system.org/gcube/index.php/ServiceManager_Guide#Search_v_3.0.x
  • https://gcube.wiki.gcube-system.org/gcube/index.php/ServiceManager_Guide#Excecution_Engine__v_2.0.x
• DONE node56.p.d4science.research-infrastructures.eu:8000: install TDM
  • war deployed
  • http://node56.p.d4science.research-infrastructures.eu:8000/tabular-data-manager-1.1.0-3.0.0/gcube/resource/

newportal

portal bundle installation

Portal bundle

• copy symm keys under $GLOBUS_LOCATION
• restore $CATALINA_HOME/webapps/ROOT/WEB-INF/classes/
• restore $CATALINA_HOME/conf
• restore $CATALINA_HOME/shared/d4s
• restore $GLOBUS_LOCATION/lib/_ext/property_files/
• add -noverify to JAVA_OPTS

• missing compos:
  • usermanagement-library
  • asl logger
  • social lib and dependencies
  • org.gcube.portal.custom-portal-handler

installed compos: ASL:

• ASL http Access management
• asl search
• asl social
• asl up
• search lib

WS:

• WS tree Widget
• WS application handler

Portlets

TDM portlet

cotrix portlet

Resource Accounting

• follow instruction for Vadin installation http://gcube.wiki.gcube-system.org/gcube/index.php/Accounting_Portlet

UserManagement Portlet

WS

XSearch

WF Document

WebApp Management

Trendylizer

TimeSeries

TImeSeriesChart

Templates

StatisticalManager

SpeciesDiscovery

SocialProfile

Share Updates

Search Portlet

Reports

Ocurrence Management

Notifications

NewsFeed

Messages

Join New

GeoExplorer Portlet

Collection Viewer

Collection Explorer

Codelist Management

MyVREs

HomeLib GroupCreator

Notification Checker

ISE

Adv Search

Coll Navigator

results

Search Manager

User profile

Resource Accounting

elastic search

FT management

FW management

IR Bootstrapper

profile admin

service endpoint

vre definition

vre deploy

vre manager

wf doc manager

ws roles editor

ws templates editor

aquamaps

accounting portlet

node accounting

Libraries

Libraries to upgrade/install under $GLOBUS_LOCATION/lib/_ext

vre modeler CL

ts chart data model

consumer-lib

g_cql parser

GN

Geoserver

UM stubs

occurrence

search CL

agent library

dt common

scheduler lib

RM client

geoserver-interface

timeseries-stubs

time-series-geotools

streams

storage-resource-link

spd-model

spd-plugin-fw

spql parser

SG client

spd-client-lib

vre-modeler-utils

vre-modeler-utils

registry plublisher

resource-registry

rrconfig -provider

rrgcube bridge

rrgcube-plugins

rrmodel

rrplugins

storage-core

storage-wrapper

common-clients

common-gcore-clients

common-fw-clients

common-ecryption

gisviewer

geoexplorer

gcube-gisviewer

gcube-geoexplorer

gcube-docx-generator

csv-import-wizard-workspace

csv-import-wizard

Codelist Lib

Codelist interface

gcubeReportinglib

document WF library

Servlets

notification checker

• to rename to notificationchecker

accounting-portal

asl-http-content-access

• rename to aslHttpContentAccess

ash-http-infrastructure-login

• rename to aslHttpInfrastructureLogin

aslHttpInformationRetrieval

• rename to aslHttpInformationRetrieval

usermanagement-ws

• rename to usermanagement-ws

Externallibs

antlr-runtime-3.4.jar aopalliance.jar backport-concurrent.jar commonj.sdo-2.1.1.v201112051852.jar commons-codec-1.3.jar commons-compress-1.3.jar commons-fileupload-1.2.1.jar commons-httpclient-3.0.1.jar commons-net-2.0.jar csv4j-1.1.0.jar datanucleus-* dom-2.3.0-jaxb-1.0.6.jar eclipselink-2.4.1.jar ezmorph-1.0.6.jar geoapi-3.0.0.jar geonetwork-manager-1.1.jar geotk-* h2-1.3.166.jar iText-2.1.4.jar ij140g.jar javassist* javax.* jcip-annotations-1.0.jar jdo-api.jar json-lib-2.4-jdk15.jar jsr* jta.jar juniversalchardet-1.0.3.jar mime-util-2.1.3.jar mockito-all-1.8.5.jar mysql-connector-java-5.1.21-bin.jar nekohtml-1.9.6.2.jar objenesis-1.2.jar ormlite-* vecmath-1.3.1.jar xmlpull-1.1.3.1.jar