Difference between revisions of "EuBrazilOpenBIO VO 2.17.0"

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(Configuration)
(Service Deployment)
 
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Line 12: Line 12:
 
===GHNs===
 
===GHNs===
  
GHN to upgrade following this [[GHN_upgrade_381|instructions]]:
+
GHN to upgrade following this [[GHN_upgrade_381|instructions]]: ( '''NOTE''' not mandatory upgrade)
  
 
*  geoserver.d4science.org:9000  
 
*  geoserver.d4science.org:9000  
Line 23: Line 23:
 
GHN to clean following this [[GHN_clean_381|instructions]]:
 
GHN to clean following this [[GHN_clean_381|instructions]]:
  
* db2.p.d4science.research-infrastructures.eu:8080  
+
* '''DONE''' db2.p.d4science.research-infrastructures.eu:8080  
* node8.p.d4science.research-infrastructures.eu:8000
+
* '''DONE''' node8.p.d4science.research-infrastructures.eu:8000
 
* '''DONE''' node12.p.d4science.research-infrastructures.eu:8080
 
* '''DONE''' node12.p.d4science.research-infrastructures.eu:8080
 
* '''DONE''' node16.p.d4science.research-infrastructures.eu:8080  
 
* '''DONE''' node16.p.d4science.research-infrastructures.eu:8080  
Line 57: Line 57:
 
===Service Deployment===
 
===Service Deployment===
  
* db2.p.d4science.research-infrastructures.eu:8080 : deploy SM
+
* '''DONE''' db2.p.d4science.research-infrastructures.eu:8080 : deploy SM, install VO keys
* node8.p.d4science.research-infrastructures.eu:8000 : deploy VREModeler
+
* '''DONE''' node8.p.d4science.research-infrastructures.eu:8000 : deploy VREModeler
 
* '''DONE''' node12.p.d4science.research-infrastructures.eu:8080 : deploy Personalization
 
* '''DONE''' node12.p.d4science.research-infrastructures.eu:8080 : deploy Personalization
 
* '''DONE''' node16.p.d4science.research-infrastructures.eu:8080 : deploy DataTransformation,ExecutionEngine
 
* '''DONE''' node16.p.d4science.research-infrastructures.eu:8080 : deploy DataTransformation,ExecutionEngine
Line 64: Line 64:
 
* '''DONE''' node21.p.d4science.research-infrastructures.eu:8080 : deploy FTIndex
 
* '''DONE''' node21.p.d4science.research-infrastructures.eu:8080 : deploy FTIndex
 
* '''DONE''' node34.p.d4science.research-infrastructures.eu:8080 : updrade OAI-TM plugin
 
* '''DONE''' node34.p.d4science.research-infrastructures.eu:8080 : updrade OAI-TM plugin
* '''DONE''' node24.d4science.org:8080 : deploy Search , ExecutionEngine ( add ghn to SpeciesLab scope)
+
* '''DONE''' node24.d4science.org:8080 : deploy Search , ExecutionEngine ( add ghn to SpeciesLab scope)
  
 
== Portal ==
 
== Portal ==
Line 81: Line 81:
 
* run the client as follows
 
* run the client as follows
  
  mkdir artifacts
+
  mkdir artifacts under artifact-downloader folder
  
 
  ./ArtifactDownloader ./2.17.0/list_components  http://grids16.eng.it/BuildReport/bdownload/Recent_Builds/org.gcube.2-17-0/latest/reports/org.gcube-org.gcube.2-17-0-tar.gz.txt ./artifacts http://grids16.eng.it/BuildReport/bdownload/Recent_Builds/org.gcube.2-17-0/latest
 
  ./ArtifactDownloader ./2.17.0/list_components  http://grids16.eng.it/BuildReport/bdownload/Recent_Builds/org.gcube.2-17-0/latest/reports/org.gcube-org.gcube.2-17-0-tar.gz.txt ./artifacts http://grids16.eng.it/BuildReport/bdownload/Recent_Builds/org.gcube.2-17-0/latest
Line 91: Line 91:
 
* org.gcube.messaging.accounting-portlet.1-9-0
 
* org.gcube.messaging.accounting-portlet.1-9-0
 
* org.gcube.messaging.node-accounting-portlet.1-5-0  
 
* org.gcube.messaging.node-accounting-portlet.1-5-0  
* org.gcube.data-transfer.scheduler-portlet.2-1-0
 
 
* org.gcube.data-transfer.storagemanager-portlet.1-1-0  
 
* org.gcube.data-transfer.storagemanager-portlet.1-1-0  
 
* org.gcube.portlets-admin.collection-explorer.2-0-0
 
* org.gcube.portlets-admin.collection-explorer.2-0-0
Line 100: Line 99:
 
* org.gcube.portlets-admin.vre-deployer.3-0-0
 
* org.gcube.portlets-admin.vre-deployer.3-0-0
 
* org.gcube.portlets-admin.vre-manager.5-0-0
 
* org.gcube.portlets-admin.vre-manager.5-0-0
* org.gcube.portlets-admin.wf-docs-manager.2-1-0
 
* org.gcube.portlets-admin.wf-roles-editor.1-4-0
 
* org.gcube.portlets-admin.wf-templates-editor.2-1-0
 
 
* org.gcube.portlets-admin.users-management-portlet.1-9-0
 
* org.gcube.portlets-admin.users-management-portlet.1-9-0
 
* org.gcube.portlets-admin.search-manager-portlet.1-5-0
 
* org.gcube.portlets-admin.search-manager-portlet.1-5-0
Line 110: Line 106:
 
* org.gcube.portlets-admin.ft-index-management-portlet.2-2-0  
 
* org.gcube.portlets-admin.ft-index-management-portlet.2-2-0  
 
* org.gcube.portlets-admin.information-space-editor-portlet.2-5-0  
 
* org.gcube.portlets-admin.information-space-editor-portlet.2-5-0  
* org.gcube.portlets-admin.policy-definition-portlet.2-0-0
 
* org.gcube.application.aquamaps.aquamapsportlet.3-1-0
 
* org.gcube.application.aquamaps.aquamapsspeciesview.1-3-0
 
* org.gcube.application.aquamaps.datamanagementfacilityportlet.1-7-0
 
 
* org.gcube.portlets-user.geoexplorer-portlet.2-4-0  
 
* org.gcube.portlets-user.geoexplorer-portlet.2-4-0  
 
* org.gcube.portlets-user.workspace-portlet.6-5-0
 
* org.gcube.portlets-user.workspace-portlet.6-5-0
Line 125: Line 117:
 
* org.gcube.portlets-user.newsfeed.1-4-0
 
* org.gcube.portlets-user.newsfeed.1-4-0
 
* org.gcube.portlets-user.notifications.1-0-0
 
* org.gcube.portlets-user.notifications.1-0-0
* org.gcube.portlets-user.report-generator-portlet.4-5-0
 
 
* org.gcube.portlets-user.socialprofile.0-3-0
 
* org.gcube.portlets-user.socialprofile.0-3-0
* org.gcube.portlets-user.template-creator.4-5-0
 
* org.gcube.portlets-user.wf-documents-portlet.1-5-0
 
* org.gcube.portlets-user.codelist-management-portlet.1-4-0
 
 
* org.gcube.portlets-user.collections-navigator-portlet.2-1-0
 
* org.gcube.portlets-user.collections-navigator-portlet.2-1-0
 
* org.gcube.portlets-user.search-portlet.3-2-0
 
* org.gcube.portlets-user.search-portlet.3-2-0
Line 136: Line 124:
 
* org.gcube.portlets-user.occurrence-management.2-0-0
 
* org.gcube.portlets-user.occurrence-management.2-0-0
 
* org.gcube.portlets-user.shareupdates-1-0-0
 
* org.gcube.portlets-user.shareupdates-1-0-0
*org.gcube.portlets-user.myvres.1-0-0
+
* org.gcube.portlets-user.myvres.1-0-0
* org.gcube.portlets-user.time-series-charts-portlet.1-6-0 ( from Maven)
+
* ENM portlet (from Eric)
* org.gcube.portlets-user.web-application-management-portlet.1-4-0 ( from Maven)
+
* Cross mapping (from Eric)
* org.gcube.portlets-user.time-series-portlet.3-5-0 ( from Maven)
+
* org.gcube.portlets-user.trendylyzer-portlet.1-0-2 (from Maven)
+
  
 
Given the name changes, layouts must also be revised to add the new portlet
 
Given the name changes, layouts must also be revised to add the new portlet
Line 146: Line 132:
 
new portlet:
 
new portlet:
  
* org.gcube.portlets-user.tabular-data-portlet.1-0-0
 
 
* org.gcube.portlets-user.iSearch-portlet.0-1-0
 
* org.gcube.portlets-user.iSearch-portlet.0-1-0
  
Line 153: Line 138:
  
 
* RuntimeResourceCreator-portlet
 
* RuntimeResourceCreator-portlet
* aquamapsportlet
 
* aquamapsspeciesview
 
 
* CollectionExplorer
 
* CollectionExplorer
 
* CollectionsNavigatorPortlet
 
* CollectionsNavigatorPortlet
* datamanagementfacility
 
 
* GCubeLogin
 
* GCubeLogin
 
* nodeaccountingui
 
* nodeaccountingui
* SearchManagerPortlet
 
 
* OccurrenceManagement
 
* OccurrenceManagement
 
* InformationSpaceEditor
 
* InformationSpaceEditor
 
* UserProfileEditingPortlet
 
* UserProfileEditingPortlet
* WebApplicationManagementPortlet
+
=== Servlets===
 +
servlet to install uner  $CATALINA_HOME/webapp
  
 +
* org.gcube.application-support-layer.application-support-layer-http-information-retrieval.1-4-0
 +
* org.gcube.application-support-layer.application-support-layer-http-content-access.1-2-0
 +
* org.gcube.application-support-layer.application-support-layer-http-infrastructure-login.1-1-0
 +
* org.gcube.application-support-layer-http-access-management.1-1-0
 
===Libraries===
 
===Libraries===
  
Libraries to upgrade/install under $GLOBUS_LOCATION/lib/_ext  
+
'''DONE''' Libraries to upgrade/install under $GLOBUS_LOCATION/lib/_ext  
  
 
* org.gcube.portal.portal-manager.1-0-0
 
* org.gcube.portal.portal-manager.1-0-0
Line 175: Line 161:
 
* org.gcube.vre-management.vremodeler-client-library.1-0-0
 
* org.gcube.vre-management.vremodeler-client-library.1-0-0
 
* org.gcube.search.opensearchdatasource-client-library.1-0-0
 
* org.gcube.search.opensearchdatasource-client-library.1-0-0
* org.gcube.application.aquamaps.aquamapsservice-cl.3-0-0
 
 
* org.gcube.vre-management.ghnmanager-client.1-0-0
 
* org.gcube.vre-management.ghnmanager-client.1-0-0
 
* org.gcube.search.search-client-library.1-0-1
 
* org.gcube.search.search-client-library.1-0-1
 
* org.gcube.portlets-widgets.application-news-widget.1-3-0
 
* org.gcube.portlets-widgets.application-news-widget.1-3-0
 
* org.gcube.portlets-widgets.guided-tour-widget.1-4-0
 
* org.gcube.portlets-widgets.guided-tour-widget.1-4-0
* org.gcube.portlets-widgets.pickuser-widget.0-4-0
+
* org.gcube.portlets-widgets.pickuser-widget.0-4-0 '''NOT NEEDED''' In the context
* org.gcube.portlets-widgets.report-exporter-widget.1-1-0
+
* org.gcube.portlets-widgets.report-exporter-widget.1-1-0 '''NOT NEEDED'''  In the context
* org.gcube.portlets-widgets.switch-button-widget.1-0-0
+
* org.gcube.portlets-widgets.switch-button-widget.1-0-0 '''NOT NEEDED'''  In the context
* org.gcube.portlets-widgets.user-selection-dialog.1-0-0
+
* org.gcube.portlets-widgets.user-selection-dialog.1-0-0 '''NOT NEEDED'''  In the context
* org.gcube.portlets-widgets.wsmail-widget.1-4-0
+
* org.gcube.portlets-widgets.wsmail-widget.1-4-0 '''NOT NEEDED'''  In the context
* org.gcube.portlets-admin.software-upload-wizard.1-2-0
+
* org.gcube.portlets-admin.software-upload-wizard.1-2-0 '''NOT NEEDED'''  In the context
* org.gcube.portlets-admin.resource-sweeper.2-0-0
+
* org.gcube.portlets-admin.resource-sweeper.2-0-0 '''NOT NEEDED'''  In the context
* org.gcube.portlets-admin.document-workflow-library.1-4-0
+
* org.gcube.portlets-admin.ishealth-monitor.1-1-0 '''NOT NEEDED'''  In the context
* org.gcube.portlets-admin.ishealth-monitor.1-1-0
+
* org.gcube.portlets-admin.rmp-common-library.2-0-0 '''NOT NEEDED'''  In the context
* org.gcube.portlets-admin.rmp-common-library.2-0-0
+
* org.gcube.portlets-admin.activation-record-widget.1-2-0 '''NOT NEEDED'''  In the context
* org.gcube.portlets-admin.activation-record-widget.1-2-0
+
 
* org.gcube.data-analysis.ecological-engine-external-algorithms.1.1.1
 
* org.gcube.data-analysis.ecological-engine-external-algorithms.1.1.1
* org.gcube.data-analysis.ecological-geospatial-extensions.1.1.0
+
* org.gcube.data-analysis.ecological-geospatial-extensions.1.1.0 '''NOT FOUND'''
 
* org.gcube.data-analysis.statistical-manager-cl.1.1.3
 
* org.gcube.data-analysis.statistical-manager-cl.1.1.3
* org.gcube.portlets-user.GISViewer.3-3-0
+
* org.gcube.portlets-user.GISViewer.3-3-0 '''
* org.gcube.portlets-user.gcube-GISViewer.2-1-0
+
* org.gcube.portlets-user.gcube-GISViewer.2-1-0  
 
* org.gcube.portlets-user.geoexplorer.2-5-0
 
* org.gcube.portlets-user.geoexplorer.2-5-0
 
* org.gcube.portlets-user.gcube-geoexplorer.2-5-0
 
* org.gcube.portlets-user.gcube-geoexplorer.2-5-0
* org.gcube.portlets-user.gcube-reporting-library.3-3-0
+
* gis-interface.2-0-1
* org.gcube.portlets-user.gcube-widgets-library.1-7-0
+
*  geonetwork.2-0-1
* org.gcube.portlets-user.codelist-library.1-3-0
+
* org.gcube.portlets-user.gcube-widgets-library.1-7-0 '''NOT NEEDED''' Build Time Solo
 
* org.gcube.portlets-user.csv-import-wizard.1-2-0
 
* org.gcube.portlets-user.csv-import-wizard.1-2-0
 
* occurrence-reconciliation.2-0-0
 
* occurrence-reconciliation.2-0-0
 
* org.gcube.index-management.forwardindexnode-client-library.1-2-0
 
* org.gcube.index-management.forwardindexnode-client-library.1-2-0
 
* org.gcube.index-management.fulltextindexnode-client-library.1-2-0
 
* org.gcube.index-management.fulltextindexnode-client-library.1-2-0
* org.gcube.data-transformation.data-transformation-client-library.3-0-0
+
* org.gcube.data-transformation.data-transformation-client-library.3-0-0 '''NOT FOUND'''
 
* org.gcube.execution.RRPlugins.1-0-2  
 
* org.gcube.execution.RRPlugins.1-0-2  
 
* org.gcube.execution.RRModel.1-5-0  
 
* org.gcube.execution.RRModel.1-5-0  
 
* org.gcube.execution.RRGCubeBridge.1-5-0
 
* org.gcube.execution.RRGCubeBridge.1-5-0
* org.gcube.execution.ResourceRegistry.1-4-0
+
* org.gcube.execution.ResourceRegistry.1-4-0 '''NOT FOUND'''
* org.gcube.execution.rrconfprovider-portal.1-0-0 (from Maven)
+
* org.gcube.execution.rrconfprovider-portal.1-0-0 (from Maven) '''DONE OK'''
*  gis-interface.2-0-1
+
*  geonetwork.2-0-1
+
 
*  common-clients-2.1.0
 
*  common-clients-2.1.0
 
*  common-gcore-clients-2.2.0
 
*  common-gcore-clients-2.2.0
Line 218: Line 200:
 
*  org.gcube.messaging.consumer-library.2-1-0
 
*  org.gcube.messaging.consumer-library.2-1-0
 
* spd-client-library.3-1-1
 
* spd-client-library.3-1-1
* org.gcube.data-transfer.scheduler-library.2-1-0
 
 
* org.gcube.content-management.storage-resource-link-plugin.1-1-0
 
* org.gcube.content-management.storage-resource-link-plugin.1-1-0
 
*  org.gcube.content-management.storage-manager-core.2.0.3
 
*  org.gcube.content-management.storage-manager-core.2.0.3
Line 224: Line 205:
 
* org.gcube.portlets-user.csv-import-wizard-workspace-extension.1-2-0  (from Maven)
 
* org.gcube.portlets-user.csv-import-wizard-workspace-extension.1-2-0  (from Maven)
 
*  org.gcube.data-analysis.statistical-manager-stubs.1-1-4
 
*  org.gcube.data-analysis.statistical-manager-stubs.1-1-4
*  org.gcube.portlets-user.codelist-interface.1-1-1 ( from Maven)
 
  
Libraries to be upgraded under $GLOBUS_LOCATION/lib/  
+
'''DONE''' Libraries to be upgraded under $GLOBUS_LOCATION/lib/  
  
 
* registry-publisher-1.2.1
 
* registry-publisher-1.2.1
  
  
Libraries to be upgraded under $GLOBUS_LOCATION/lib/_social-library/
+
''DONE''' Libraries to be upgraded under $GLOBUS_LOCATION/lib/_social-library/
  
 
* org.gcube.portal.social-networking-library.1-4-0
 
* org.gcube.portal.social-networking-library.1-4-0
  
  
Libraries to be upgraded under $GLOBUS_LOCATION/lib/_home-library  
+
'''DONE''' Libraries to be upgraded under $GLOBUS_LOCATION/lib/_home-library  
  
 
* org.gcube.common.home-library.1-0-0
 
* org.gcube.common.home-library.1-0-0
Line 245: Line 225:
  
  
Libraries to be upgraded under $GLOBUS_LOCATION/lib/_application-support-layer  
+
'''DONE''' Libraries to be upgraded under $GLOBUS_LOCATION/lib/_application-support-layer  
  
 
* org.gcube.application-support-layer.application-support-layer-core.4-0-0
 
* org.gcube.application-support-layer.application-support-layer-core.4-0-0
Line 254: Line 234:
 
* org.gcube.application-support-layer.application-support-layer-vremanagement.5-0-0
 
* org.gcube.application-support-layer.application-support-layer-vremanagement.5-0-0
 
* org.gcube.application-support-layer.application-support-layer-userprofile.4-0-0
 
* org.gcube.application-support-layer.application-support-layer-userprofile.4-0-0
 
servlet to install uner  $CATALINA_HOME/webapp
 
 
* org.gcube.application-support-layer.application-support-layer-http-information-retrieval.1-4-0
 
* org.gcube.application-support-layer.application-support-layer-http-content-access.1-2-0
 
* org.gcube.application-support-layer.application-support-layer-http-infrastructure-login.1-1-0
 
* org.gcube.application-support-layer-http-access-management.1-1-0
 
 
  
  
Libraries to remove from GLOBUS_LOCATION/lib/ext
+
'''DONE'''  Libraries to remove from GLOBUS_LOCATION/lib/_ext
  
 
* org.gcube.tools.sam.reports.jar
 
* org.gcube.tools.sam.reports.jar
Line 279: Line 251:
 
* opensearchdatasource-stubs-1.6.2-2.15.0.jar
 
* opensearchdatasource-stubs-1.6.2-2.15.0.jar
 
* data-transformation-service-stubs-2.2.3-2.12.0.jar
 
* data-transformation-service-stubs-2.2.3-2.12.0.jar
* aquamapsservice-stubs-4.2.0-2.16.0.jar
 
  
  
Libraries to remove from $GLOBUS_LOCATION/lib/_application-support-layer   
+
'''DONE''' Libraries to remove from $GLOBUS_LOCATION/lib/_application-support-layer   
  
 
* org.gcube.application-support-layer.application-support-layer-oai_pmh
 
* org.gcube.application-support-layer.application-support-layer-oai_pmh
  
Libraries to remove from $GLOBUS_LOCATION/lib/_home-library  
+
'''DONE''' Libraries to remove from $GLOBUS_LOCATION/lib/_home-library  
  
 
* org.gcube.portlets-user.home-library
 
* org.gcube.portlets-user.home-library
Line 292: Line 263:
  
  
External components:  
+
'''DONE''' External components:  
 
* gwt-fix-2.5.1-gxt2.jar
 
* gwt-fix-2.5.1-gxt2.jar
 
* gwt-servlet-deps.jar
 
* gwt-servlet-deps.jar
 
* gwt-servlet.jar
 
* gwt-servlet.jar
* gwt-user-2.5.1.jar
+
* gwt-user-2.5.1.jar '''NOT DONE'''
  
 
=== Configuration ===
 
=== Configuration ===
Line 311: Line 282:
 
* symmetric keys for d4science.research-infrastructures.eu scope and  EUBrazilOpenBio should be installed under $GLOBUS_LOCATION , they can be downloaded from http://goo.gl/EKDwqd
 
* symmetric keys for d4science.research-infrastructures.eu scope and  EUBrazilOpenBio should be installed under $GLOBUS_LOCATION , they can be downloaded from http://goo.gl/EKDwqd
  
* The ResourceRegistry property files bundle have be downloaded from [https://www.dropbox.com/s/oegqcbaclipuqk8/property-files.tar.gz] and unpacked under the $GLOBUS_LOCATION/lib/_ext folder
+
* The ResourceRegistry property files bundle have to be downloaded from [https://www.dropbox.com/s/oegqcbaclipuqk8/property-files.tar.gz] and unpacked under the $GLOBUS_LOCATION/lib/_ext folder

Latest revision as of 16:17, 21 November 2013

gHN Upgrade Instructions

The upgrade to the latest version of GHNgCube Hosting Node. (v 3.8.1) and gCube (2.17.0) requires Site Manager to apply the following upgrade instructions

Clean and upgrade

  • Clean and upgrade to GHNgCube Hosting Node. v 3.8.1 using the following instructions
  • upgrade to GHNgCube Hosting Node. v 3.8.1 using the following instructions

EUBrazilOpenBio VOVirtual Organization;

GHNs

GHNgCube Hosting Node. to upgrade following this instructions: ( NOTE not mandatory upgrade)

  • geoserver.d4science.org:9000
  • geoserver2.d4science.org:9000
  • geoserver3.d4science.org:9000
  • geoserver4.d4science.org:9000
  • node77.p.d4science.research-infrastructures.eu:8080
  • DONE node34.p.d4science.research-infrastructures.eu:8080

GHNgCube Hosting Node. to clean following this instructions:

  • DONE db2.p.d4science.research-infrastructures.eu:8080
  • DONE node8.p.d4science.research-infrastructures.eu:8000
  • DONE node12.p.d4science.research-infrastructures.eu:8080
  • DONE node16.p.d4science.research-infrastructures.eu:8080
  • DONE node19.p.d4science.research-infrastructures.eu:8080
  • DONE node21.p.d4science.research-infrastructures.eu:8080
  • (UPV) gcube01.i3m.upv.es:8080
  • (UPV) gcube01.i3m.upv.es:8081
  • (UPV) gcube01.i3m.upv.es:8082
  • (UPV) gcube01.i3m.upv.es:8083
  • (UPV) gcube02.i3m.upv.es:8080
  • (UPV) gcube02.i3m.upv.es:8081
  • (UPV) gcube02.i3m.upv.es:8082
  • (UPV) gcube02.i3m.upv.es:8083
  • (UPV) gcube03.i3m.upv.es:8080
  • (UPV) gcube03.i3m.upv.es:8081
  • (UPV) gcube03.i3m.upv.es:8082
  • (UPV) gcube03.i3m.upv.es:8083
  • (UPV) gcube04.i3m.upv.es:8080
  • (UPV) gcube04.i3m.upv.es:8081
  • (UPV) gcube04.i3m.upv.es:8082
  • (UPV) gcube04.i3m.upv.es:8083
  • (UPV) gcube05.i3m.upv.es:8080
  • (UPV) gcube05.i3m.upv.es:8081
  • (UPV) gcube05.i3m.upv.es:8082
  • (UPV) gcube05.i3m.upv.es:8083
  • (UFF) sn10.ic.uff.br:8080

new GHNgCube Hosting Node. to install:

  • DONE (CNR) node24.d4science.org:8080

Service Deployment

  • DONE db2.p.d4science.research-infrastructures.eu:8080 : deploy SM, install VOVirtual Organization; keys
  • DONE node8.p.d4science.research-infrastructures.eu:8000 : deploy VREModeler
  • DONE node12.p.d4science.research-infrastructures.eu:8080 : deploy Personalization
  • DONE node16.p.d4science.research-infrastructures.eu:8080 : deploy DataTransformation,ExecutionEngine
  • DONE node19.p.d4science.research-infrastructures.eu:8080 : deploy CouchBase, FWIndex
  • DONE node21.p.d4science.research-infrastructures.eu:8080 : deploy FTIndex
  • DONE node34.p.d4science.research-infrastructures.eu:8080 : updrade OAI-TM plugin
  • DONE node24.d4science.org:8080 : deploy Search , ExecutionEngine ( add ghn to SpeciesLab scope)

Portal

GHNgCube Hosting Node. upgrade

  • upgrade to GHNgCube Hosting Node. v 3.8.1 using the following instructions

Components installation

Artifact can be downloaded using the following instructions:

  • Install Artifact dowloaded tool
svn export  https://svn.d4science.research-infrastructures.eu/gcube/trunk/tools/artifact-downloader/ 
  • run the client as follows
mkdir artifacts under artifact-downloader folder
./ArtifactDownloader ./2.17.0/list_components  http://grids16.eng.it/BuildReport/bdownload/Recent_Builds/org.gcube.2-17-0/latest/reports/org.gcube-org.gcube.2-17-0-tar.gz.txt ./artifacts http://grids16.eng.it/BuildReport/bdownload/Recent_Builds/org.gcube.2-17-0/latest

Portlets

to Upgrade:

  • org.gcube.messaging.accounting-portlet.1-9-0
  • org.gcube.messaging.node-accounting-portlet.1-5-0
  • org.gcube.data-transfer.storagemanager-portlet.1-1-0
  • org.gcube.portlets-admin.collection-explorer.2-0-0
  • org.gcube.portlets-admin.collections-viewer.2-1-0
  • org.gcube.portlets-admin.resource-management-portlet.5-1-0
  • org.gcube.portlets-admin.runtime-resource-creator.1-4-0
  • org.gcube.portlets-admin.vre-definition.4-1-0
  • org.gcube.portlets-admin.vre-deployer.3-0-0
  • org.gcube.portlets-admin.vre-manager.5-0-0
  • org.gcube.portlets-admin.users-management-portlet.1-9-0
  • org.gcube.portlets-admin.search-manager-portlet.1-5-0
  • org.gcube.portlets-admin.roles-management-portlet.1-6-0
  • org.gcube.portlets-admin.ir-bootstrapper-portlet.2-4-0
  • org.gcube.portlets-admin.fwd-index-management-portlet.2-1-0
  • org.gcube.portlets-admin.ft-index-management-portlet.2-2-0
  • org.gcube.portlets-admin.information-space-editor-portlet.2-5-0
  • org.gcube.portlets-user.geoexplorer-portlet.2-4-0
  • org.gcube.portlets-user.workspace-portlet.6-5-0
  • org.gcube.portlets-user.messages.0-4-0
  • org.gcube.portlets-user.species-discovery.3-5-0
  • org.gcube.portlets-user.xsearch-portlet.1-1-1
  • org.gcube.portlets-user.statistical-manager-portlet.1-2-3
  • org.gcube.portlets-user.gcube-loggedin-portlet.2-2-0
  • org.gcube.portlets-user.gcube-login-portlet.2-0-0
  • org.gcube.portlets-user.join-new-environment.1-3-0
  • org.gcube.portlets-user.newsfeed.1-4-0
  • org.gcube.portlets-user.notifications.1-0-0
  • org.gcube.portlets-user.socialprofile.0-3-0
  • org.gcube.portlets-user.collections-navigator-portlet.2-1-0
  • org.gcube.portlets-user.search-portlet.3-2-0
  • org.gcube.portlets-user.results-portlet.5-3-0
  • org.gcube.portlets-user.user-profile-portlet-new.1-6-0
  • org.gcube.portlets-user.occurrence-management.2-0-0
  • org.gcube.portlets-user.shareupdates-1-0-0
  • org.gcube.portlets-user.myvres.1-0-0
  • ENM portlet (from Eric)
  • Cross mapping (from Eric)

Given the name changes, layouts must also be revised to add the new portlet

new portlet:

  • org.gcube.portlets-user.iSearch-portlet.0-1-0


to remove cause replaced by mavenized version

  • RuntimeResourceCreator-portlet
  • CollectionExplorer
  • CollectionsNavigatorPortlet
  • GCubeLogin
  • nodeaccountingui
  • OccurrenceManagement
  • InformationSpaceEditor
  • UserProfileEditingPortlet

Servlets

servlet to install uner $CATALINA_HOME/webapp

  • org.gcube.application-support-layer.application-support-layer-http-information-retrieval.1-4-0
  • org.gcube.application-support-layer.application-support-layer-http-content-access.1-2-0
  • org.gcube.application-support-layer.application-support-layer-http-infrastructure-login.1-1-0
  • org.gcube.application-support-layer-http-access-management.1-1-0

Libraries

DONE Libraries to upgrade/install under $GLOBUS_LOCATION/lib/_ext

  • org.gcube.portal.portal-manager.1-0-0
  • org.gcube.portal.custom-portal-handler.1-3-0
  • org.gcube.vre-management.resourcemanager-client.1-0-0
  • org.gcube.vre-management.vremodeler-client-library.1-0-0
  • org.gcube.search.opensearchdatasource-client-library.1-0-0
  • org.gcube.vre-management.ghnmanager-client.1-0-0
  • org.gcube.search.search-client-library.1-0-1
  • org.gcube.portlets-widgets.application-news-widget.1-3-0
  • org.gcube.portlets-widgets.guided-tour-widget.1-4-0
  • org.gcube.portlets-widgets.pickuser-widget.0-4-0 NOT NEEDED In the context
  • org.gcube.portlets-widgets.report-exporter-widget.1-1-0 NOT NEEDED In the context
  • org.gcube.portlets-widgets.switch-button-widget.1-0-0 NOT NEEDED In the context
  • org.gcube.portlets-widgets.user-selection-dialog.1-0-0 NOT NEEDED In the context
  • org.gcube.portlets-widgets.wsmail-widget.1-4-0 NOT NEEDED In the context
  • org.gcube.portlets-admin.software-upload-wizard.1-2-0 NOT NEEDED In the context
  • org.gcube.portlets-admin.resource-sweeper.2-0-0 NOT NEEDED In the context
  • org.gcube.portlets-admin.ishealth-monitor.1-1-0 NOT NEEDED In the context
  • org.gcube.portlets-admin.rmp-common-library.2-0-0 NOT NEEDED In the context
  • org.gcube.portlets-admin.activation-record-widget.1-2-0 NOT NEEDED In the context
  • org.gcube.data-analysis.ecological-engine-external-algorithms.1.1.1
  • org.gcube.data-analysis.ecological-geospatial-extensions.1.1.0 NOT FOUND
  • org.gcube.data-analysis.statistical-manager-cl.1.1.3
  • org.gcube.portlets-user.GISViewer.3-3-0
  • org.gcube.portlets-user.gcube-GISViewer.2-1-0
  • org.gcube.portlets-user.geoexplorer.2-5-0
  • org.gcube.portlets-user.gcube-geoexplorer.2-5-0
  • gis-interface.2-0-1
  • geonetwork.2-0-1
  • org.gcube.portlets-user.gcube-widgets-library.1-7-0 NOT NEEDED Build Time Solo
  • org.gcube.portlets-user.csv-import-wizard.1-2-0
  • occurrence-reconciliation.2-0-0
  • org.gcube.index-management.forwardindexnode-client-library.1-2-0
  • org.gcube.index-management.fulltextindexnode-client-library.1-2-0
  • org.gcube.data-transformation.data-transformation-client-library.3-0-0 NOT FOUND
  • org.gcube.execution.RRPlugins.1-0-2
  • org.gcube.execution.RRModel.1-5-0
  • org.gcube.execution.RRGCubeBridge.1-5-0
  • org.gcube.execution.ResourceRegistry.1-4-0 NOT FOUND
  • org.gcube.execution.rrconfprovider-portal.1-0-0 (from Maven) DONE OK
  • common-clients-2.1.0
  • common-gcore-clients-2.2.0
  • common-fw-clients-1.1.0
  • org.gcube.messaging.consumer-library.2-1-0
  • spd-client-library.3-1-1
  • org.gcube.content-management.storage-resource-link-plugin.1-1-0
  • org.gcube.content-management.storage-manager-core.2.0.3
  • org.gcube.vre-management.vremodeler-utils.1-0-0
  • org.gcube.portlets-user.csv-import-wizard-workspace-extension.1-2-0 (from Maven)
  • org.gcube.data-analysis.statistical-manager-stubs.1-1-4

DONE Libraries to be upgraded under $GLOBUS_LOCATION/lib/

  • registry-publisher-1.2.1


DONE' Libraries to be upgraded under $GLOBUS_LOCATION/lib/_social-library/

  • org.gcube.portal.social-networking-library.1-4-0


DONE Libraries to be upgraded under $GLOBUS_LOCATION/lib/_home-library

  • org.gcube.common.home-library.1-0-0
  • org.gcube.common.home-library-jcr.1-0-0
  • org.gcube.portlets-user.workspace-application-handler.1-1-0
  • org.gcube.portlets-user.workspace-portlet-tree.6-5-0
  • org.gucbe.portlets-widgets.workspace-light-tree.2-13-0


DONE Libraries to be upgraded under $GLOBUS_LOCATION/lib/_application-support-layer

  • org.gcube.application-support-layer.application-support-layer-core.4-0-0
  • org.gcube.application-support-layer.application-support-layer-search.5-0-0
  • org.gcube.application-support-layer.application-support-layer-content.6-0-0
  • org.gcube.application-support-layer.gcube-search-library.1-2-0
  • org.gcube.application-support-layer.social.0-7-1
  • org.gcube.application-support-layer.application-support-layer-vremanagement.5-0-0
  • org.gcube.application-support-layer.application-support-layer-userprofile.4-0-0


DONE Libraries to remove from GLOBUS_LOCATION/lib/_ext

  • org.gcube.tools.sam.reports.jar
  • org.gcube.application.aquamaps.aquamapsservice-stubs
  • org.gcube.application-support-layer.application-support-layer-oai_ore
  • org.gcube.indexmanagement.fulltextindexlookup.stubs.jar
  • org.gcube.personalization.profileadministration.stubs.jar
  • org.gcube.personalization.userprofileaccess.stubs.jar
  • profileadministration-stubs-2.0.0-2.15.0.jar
  • searchsystemservice-stubs-2.0.3-2.12.0.jar
  • tree-manager-stubs-3.0.0-2.12.0.jar
  • userprofileaccess-stubs-3.0.0-2.15.0.jar
  • vremodeler-stubs-2.0.1-2.12.0.jar
  • opensearchdatasource-stubs-1.6.2-2.15.0.jar
  • data-transformation-service-stubs-2.2.3-2.12.0.jar


DONE Libraries to remove from $GLOBUS_LOCATION/lib/_application-support-layer

  • org.gcube.application-support-layer.application-support-layer-oai_pmh

DONE Libraries to remove from $GLOBUS_LOCATION/lib/_home-library

  • org.gcube.portlets-user.home-library
  • org.gcube.portlets-user.home-library-jcr


DONE External components:

  • gwt-fix-2.5.1-gxt2.jar
  • gwt-servlet-deps.jar
  • gwt-servlet.jar
  • gwt-user-2.5.1.jar NOT DONE

Configuration

  • the infrastructure.properties file should be created under $CATALINA_HOME/conf :

for EUBrazilOpenBio portal the content should be

infrastructure=d4science.research-infrastructures.eu
scopes=EUBrazilOpenBio


  • symmetric keys for d4science.research-infrastructures.eu scope and EUBrazilOpenBio should be installed under $GLOBUS_LOCATION , they can be downloaded from http://goo.gl/EKDwqd
  • The ResourceRegistry property files bundle have to be downloaded from [1] and unpacked under the $GLOBUS_LOCATION/lib/_ext folder