Difference between revisions of "EuBrazilOpenBIO VO 2.17.0"
From D4Science Wiki
Andrea.manzi (Talk | contribs) (→Portlets) |
Andrea.manzi (Talk | contribs) (→Portlets) |
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* org.gcube.messaging.accounting-portlet.1-9-0 | * org.gcube.messaging.accounting-portlet.1-9-0 | ||
* org.gcube.messaging.node-accounting-portlet.1-5-0 | * org.gcube.messaging.node-accounting-portlet.1-5-0 | ||
| − | |||
* org.gcube.data-transfer.storagemanager-portlet.1-1-0 | * org.gcube.data-transfer.storagemanager-portlet.1-1-0 | ||
* org.gcube.portlets-admin.collection-explorer.2-0-0 | * org.gcube.portlets-admin.collection-explorer.2-0-0 | ||
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* org.gcube.portlets-admin.vre-deployer.3-0-0 | * org.gcube.portlets-admin.vre-deployer.3-0-0 | ||
* org.gcube.portlets-admin.vre-manager.5-0-0 | * org.gcube.portlets-admin.vre-manager.5-0-0 | ||
| − | |||
| − | |||
| − | |||
* org.gcube.portlets-admin.users-management-portlet.1-9-0 | * org.gcube.portlets-admin.users-management-portlet.1-9-0 | ||
* org.gcube.portlets-admin.search-manager-portlet.1-5-0 | * org.gcube.portlets-admin.search-manager-portlet.1-5-0 | ||
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* org.gcube.portlets-admin.ft-index-management-portlet.2-2-0 | * org.gcube.portlets-admin.ft-index-management-portlet.2-2-0 | ||
* org.gcube.portlets-admin.information-space-editor-portlet.2-5-0 | * org.gcube.portlets-admin.information-space-editor-portlet.2-5-0 | ||
| − | |||
| − | |||
| − | |||
| − | |||
* org.gcube.portlets-user.geoexplorer-portlet.2-4-0 | * org.gcube.portlets-user.geoexplorer-portlet.2-4-0 | ||
* org.gcube.portlets-user.workspace-portlet.6-5-0 | * org.gcube.portlets-user.workspace-portlet.6-5-0 | ||
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* org.gcube.portlets-user.newsfeed.1-4-0 | * org.gcube.portlets-user.newsfeed.1-4-0 | ||
* org.gcube.portlets-user.notifications.1-0-0 | * org.gcube.portlets-user.notifications.1-0-0 | ||
| − | |||
* org.gcube.portlets-user.socialprofile.0-3-0 | * org.gcube.portlets-user.socialprofile.0-3-0 | ||
| − | |||
| − | |||
| − | |||
* org.gcube.portlets-user.collections-navigator-portlet.2-1-0 | * org.gcube.portlets-user.collections-navigator-portlet.2-1-0 | ||
* org.gcube.portlets-user.search-portlet.3-2-0 | * org.gcube.portlets-user.search-portlet.3-2-0 | ||
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* org.gcube.portlets-user.shareupdates-1-0-0 | * org.gcube.portlets-user.shareupdates-1-0-0 | ||
* org.gcube.portlets-user.myvres.1-0-0 | * org.gcube.portlets-user.myvres.1-0-0 | ||
| − | |||
| − | |||
| − | |||
| − | |||
* ENM portlet (from Eric) | * ENM portlet (from Eric) | ||
* Cross mapping (from Eric) | * Cross mapping (from Eric) | ||
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new portlet: | new portlet: | ||
| − | |||
* org.gcube.portlets-user.iSearch-portlet.0-1-0 | * org.gcube.portlets-user.iSearch-portlet.0-1-0 | ||
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* RuntimeResourceCreator-portlet | * RuntimeResourceCreator-portlet | ||
| − | |||
| − | |||
* CollectionExplorer | * CollectionExplorer | ||
* CollectionsNavigatorPortlet | * CollectionsNavigatorPortlet | ||
| − | |||
* GCubeLogin | * GCubeLogin | ||
* nodeaccountingui | * nodeaccountingui | ||
| − | |||
* OccurrenceManagement | * OccurrenceManagement | ||
* InformationSpaceEditor | * InformationSpaceEditor | ||
* UserProfileEditingPortlet | * UserProfileEditingPortlet | ||
| − | |||
===Libraries=== | ===Libraries=== | ||
Revision as of 12:40, 18 November 2013
gHN Upgrade Instructions
The upgrade to the latest version of GHNgCube Hosting Node. (v 3.8.1) and gCube (2.17.0) requires Site Manager to apply the following upgrade instructions
Clean and upgrade
- Clean and upgrade to GHNgCube Hosting Node. v 3.8.1 using the following instructions
- upgrade to GHNgCube Hosting Node. v 3.8.1 using the following instructions
EUBrazilOpenBio VOVirtual Organization;
GHNs
GHNgCube Hosting Node. to upgrade following this instructions:
- geoserver.d4science.org:9000
- geoserver2.d4science.org:9000
- geoserver3.d4science.org:9000
- geoserver4.d4science.org:9000
- node77.p.d4science.research-infrastructures.eu:8080
- DONE node34.p.d4science.research-infrastructures.eu:8080
GHNgCube Hosting Node. to clean following this instructions:
- db2.p.d4science.research-infrastructures.eu:8080
- node8.p.d4science.research-infrastructures.eu:8000
- DONE node12.p.d4science.research-infrastructures.eu:8080
- DONE node16.p.d4science.research-infrastructures.eu:8080
- DONE node19.p.d4science.research-infrastructures.eu:8080
- DONE node21.p.d4science.research-infrastructures.eu:8080
- (UPV) gcube01.i3m.upv.es:8080
- (UPV) gcube01.i3m.upv.es:8081
- (UPV) gcube01.i3m.upv.es:8082
- (UPV) gcube01.i3m.upv.es:8083
- (UPV) gcube02.i3m.upv.es:8080
- (UPV) gcube02.i3m.upv.es:8081
- (UPV) gcube02.i3m.upv.es:8082
- (UPV) gcube02.i3m.upv.es:8083
- (UPV) gcube03.i3m.upv.es:8080
- (UPV) gcube03.i3m.upv.es:8081
- (UPV) gcube03.i3m.upv.es:8082
- (UPV) gcube03.i3m.upv.es:8083
- (UPV) gcube04.i3m.upv.es:8080
- (UPV) gcube04.i3m.upv.es:8081
- (UPV) gcube04.i3m.upv.es:8082
- (UPV) gcube04.i3m.upv.es:8083
- (UPV) gcube05.i3m.upv.es:8080
- (UPV) gcube05.i3m.upv.es:8081
- (UPV) gcube05.i3m.upv.es:8082
- (UPV) gcube05.i3m.upv.es:8083
- (UFF) sn10.ic.uff.br:8080
new GHNgCube Hosting Node. to install:
- DONE (CNR) node24.d4science.org:8080
Service Deployment
- db2.p.d4science.research-infrastructures.eu:8080 : deploy SM
- node8.p.d4science.research-infrastructures.eu:8000 : deploy VREModeler
- DONE node12.p.d4science.research-infrastructures.eu:8080 : deploy Personalization
- DONE node16.p.d4science.research-infrastructures.eu:8080 : deploy DataTransformation,ExecutionEngine
- DONE node19.p.d4science.research-infrastructures.eu:8080 : deploy CouchBase, FWIndex
- DONE node21.p.d4science.research-infrastructures.eu:8080 : deploy FTIndex
- DONE node34.p.d4science.research-infrastructures.eu:8080 : updrade OAI-TM plugin
- DONE node24.d4science.org:8080 : deploy Search , ExecutionEngine ( add ghn to SpeciesLab scope)
Portal
GHNgCube Hosting Node. upgrade
- upgrade to GHNgCube Hosting Node. v 3.8.1 using the following instructions
Components installation
Artifact can be downloaded using the following instructions:
- Install Artifact dowloaded tool
svn export https://svn.d4science.research-infrastructures.eu/gcube/trunk/tools/artifact-downloader/
- run the client as follows
mkdir artifacts
./ArtifactDownloader ./2.17.0/list_components http://grids16.eng.it/BuildReport/bdownload/Recent_Builds/org.gcube.2-17-0/latest/reports/org.gcube-org.gcube.2-17-0-tar.gz.txt ./artifacts http://grids16.eng.it/BuildReport/bdownload/Recent_Builds/org.gcube.2-17-0/latest
Portlets
to Upgrade:
- org.gcube.messaging.accounting-portlet.1-9-0
- org.gcube.messaging.node-accounting-portlet.1-5-0
- org.gcube.data-transfer.storagemanager-portlet.1-1-0
- org.gcube.portlets-admin.collection-explorer.2-0-0
- org.gcube.portlets-admin.collections-viewer.2-1-0
- org.gcube.portlets-admin.resource-management-portlet.5-1-0
- org.gcube.portlets-admin.runtime-resource-creator.1-4-0
- org.gcube.portlets-admin.vre-definition.4-1-0
- org.gcube.portlets-admin.vre-deployer.3-0-0
- org.gcube.portlets-admin.vre-manager.5-0-0
- org.gcube.portlets-admin.users-management-portlet.1-9-0
- org.gcube.portlets-admin.search-manager-portlet.1-5-0
- org.gcube.portlets-admin.roles-management-portlet.1-6-0
- org.gcube.portlets-admin.ir-bootstrapper-portlet.2-4-0
- org.gcube.portlets-admin.fwd-index-management-portlet.2-1-0
- org.gcube.portlets-admin.ft-index-management-portlet.2-2-0
- org.gcube.portlets-admin.information-space-editor-portlet.2-5-0
- org.gcube.portlets-user.geoexplorer-portlet.2-4-0
- org.gcube.portlets-user.workspace-portlet.6-5-0
- org.gcube.portlets-user.messages.0-4-0
- org.gcube.portlets-user.species-discovery.3-5-0
- org.gcube.portlets-user.xsearch-portlet.1-1-1
- org.gcube.portlets-user.statistical-manager-portlet.1-2-3
- org.gcube.portlets-user.gcube-loggedin-portlet.2-2-0
- org.gcube.portlets-user.gcube-login-portlet.2-0-0
- org.gcube.portlets-user.join-new-environment.1-3-0
- org.gcube.portlets-user.newsfeed.1-4-0
- org.gcube.portlets-user.notifications.1-0-0
- org.gcube.portlets-user.socialprofile.0-3-0
- org.gcube.portlets-user.collections-navigator-portlet.2-1-0
- org.gcube.portlets-user.search-portlet.3-2-0
- org.gcube.portlets-user.results-portlet.5-3-0
- org.gcube.portlets-user.user-profile-portlet-new.1-6-0
- org.gcube.portlets-user.occurrence-management.2-0-0
- org.gcube.portlets-user.shareupdates-1-0-0
- org.gcube.portlets-user.myvres.1-0-0
- ENM portlet (from Eric)
- Cross mapping (from Eric)
Given the name changes, layouts must also be revised to add the new portlet
new portlet:
- org.gcube.portlets-user.iSearch-portlet.0-1-0
to remove cause replaced by mavenized version
- RuntimeResourceCreator-portlet
- CollectionExplorer
- CollectionsNavigatorPortlet
- GCubeLogin
- nodeaccountingui
- OccurrenceManagement
- InformationSpaceEditor
- UserProfileEditingPortlet
Libraries
Libraries to upgrade/install under $GLOBUS_LOCATION/lib/_ext
- org.gcube.portal.portal-manager.1-0-0
- org.gcube.portal.custom-portal-handler.1-3-0
- org.gcube.vre-management.resourcemanager-client.1-0-0
- org.gcube.vre-management.vremodeler-client-library.1-0-0
- org.gcube.search.opensearchdatasource-client-library.1-0-0
- org.gcube.application.aquamaps.aquamapsservice-cl.3-0-0
- org.gcube.vre-management.ghnmanager-client.1-0-0
- org.gcube.search.search-client-library.1-0-1
- org.gcube.portlets-widgets.application-news-widget.1-3-0
- org.gcube.portlets-widgets.guided-tour-widget.1-4-0
- org.gcube.portlets-widgets.pickuser-widget.0-4-0
- org.gcube.portlets-widgets.report-exporter-widget.1-1-0
- org.gcube.portlets-widgets.switch-button-widget.1-0-0
- org.gcube.portlets-widgets.user-selection-dialog.1-0-0
- org.gcube.portlets-widgets.wsmail-widget.1-4-0
- org.gcube.portlets-admin.software-upload-wizard.1-2-0
- org.gcube.portlets-admin.resource-sweeper.2-0-0
- org.gcube.portlets-admin.document-workflow-library.1-4-0
- org.gcube.portlets-admin.ishealth-monitor.1-1-0
- org.gcube.portlets-admin.rmp-common-library.2-0-0
- org.gcube.portlets-admin.activation-record-widget.1-2-0
- org.gcube.data-analysis.ecological-engine-external-algorithms.1.1.1
- org.gcube.data-analysis.ecological-geospatial-extensions.1.1.0
- org.gcube.data-analysis.statistical-manager-cl.1.1.3
- org.gcube.portlets-user.GISViewer.3-3-0
- org.gcube.portlets-user.gcube-GISViewer.2-1-0
- org.gcube.portlets-user.geoexplorer.2-5-0
- org.gcube.portlets-user.gcube-geoexplorer.2-5-0
- org.gcube.portlets-user.gcube-reporting-library.3-3-0
- org.gcube.portlets-user.gcube-widgets-library.1-7-0
- org.gcube.portlets-user.codelist-library.1-3-0
- org.gcube.portlets-user.csv-import-wizard.1-2-0
- occurrence-reconciliation.2-0-0
- org.gcube.index-management.forwardindexnode-client-library.1-2-0
- org.gcube.index-management.fulltextindexnode-client-library.1-2-0
- org.gcube.data-transformation.data-transformation-client-library.3-0-0
- org.gcube.execution.RRPlugins.1-0-2
- org.gcube.execution.RRModel.1-5-0
- org.gcube.execution.RRGCubeBridge.1-5-0
- org.gcube.execution.ResourceRegistry.1-4-0
- org.gcube.execution.rrconfprovider-portal.1-0-0 (from Maven)
- gis-interface.2-0-1
- geonetwork.2-0-1
- common-clients-2.1.0
- common-gcore-clients-2.2.0
- common-fw-clients-1.1.0
- org.gcube.messaging.consumer-library.2-1-0
- spd-client-library.3-1-1
- org.gcube.data-transfer.scheduler-library.2-1-0
- org.gcube.content-management.storage-resource-link-plugin.1-1-0
- org.gcube.content-management.storage-manager-core.2.0.3
- org.gcube.vre-management.vremodeler-utils.1-0-0
- org.gcube.portlets-user.csv-import-wizard-workspace-extension.1-2-0 (from Maven)
- org.gcube.data-analysis.statistical-manager-stubs.1-1-4
- org.gcube.portlets-user.codelist-interface.1-1-1 ( from Maven)
Libraries to be upgraded under $GLOBUS_LOCATION/lib/
- registry-publisher-1.2.1
Libraries to be upgraded under $GLOBUS_LOCATION/lib/_social-library/
- org.gcube.portal.social-networking-library.1-4-0
Libraries to be upgraded under $GLOBUS_LOCATION/lib/_home-library
- org.gcube.common.home-library.1-0-0
- org.gcube.common.home-library-jcr.1-0-0
- org.gcube.portlets-user.workspace-application-handler.1-1-0
- org.gcube.portlets-user.workspace-portlet-tree.6-5-0
- org.gucbe.portlets-widgets.workspace-light-tree.2-13-0
Libraries to be upgraded under $GLOBUS_LOCATION/lib/_application-support-layer
- org.gcube.application-support-layer.application-support-layer-core.4-0-0
- org.gcube.application-support-layer.application-support-layer-search.5-0-0
- org.gcube.application-support-layer.application-support-layer-content.6-0-0
- org.gcube.application-support-layer.gcube-search-library.1-2-0
- org.gcube.application-support-layer.social.0-7-1
- org.gcube.application-support-layer.application-support-layer-vremanagement.5-0-0
- org.gcube.application-support-layer.application-support-layer-userprofile.4-0-0
servlet to install uner $CATALINA_HOME/webapp
- org.gcube.application-support-layer.application-support-layer-http-information-retrieval.1-4-0
- org.gcube.application-support-layer.application-support-layer-http-content-access.1-2-0
- org.gcube.application-support-layer.application-support-layer-http-infrastructure-login.1-1-0
- org.gcube.application-support-layer-http-access-management.1-1-0
Libraries to remove from GLOBUS_LOCATION/lib/ext
- org.gcube.tools.sam.reports.jar
- org.gcube.application.aquamaps.aquamapsservice-stubs
- org.gcube.application-support-layer.application-support-layer-oai_ore
- org.gcube.indexmanagement.fulltextindexlookup.stubs.jar
- org.gcube.personalization.profileadministration.stubs.jar
- org.gcube.personalization.userprofileaccess.stubs.jar
- profileadministration-stubs-2.0.0-2.15.0.jar
- searchsystemservice-stubs-2.0.3-2.12.0.jar
- tree-manager-stubs-3.0.0-2.12.0.jar
- userprofileaccess-stubs-3.0.0-2.15.0.jar
- vremodeler-stubs-2.0.1-2.12.0.jar
- opensearchdatasource-stubs-1.6.2-2.15.0.jar
- data-transformation-service-stubs-2.2.3-2.12.0.jar
- aquamapsservice-stubs-4.2.0-2.16.0.jar
Libraries to remove from $GLOBUS_LOCATION/lib/_application-support-layer
- org.gcube.application-support-layer.application-support-layer-oai_pmh
Libraries to remove from $GLOBUS_LOCATION/lib/_home-library
- org.gcube.portlets-user.home-library
- org.gcube.portlets-user.home-library-jcr
External components:
- gwt-fix-2.5.1-gxt2.jar
- gwt-servlet-deps.jar
- gwt-servlet.jar
- gwt-user-2.5.1.jar
Configuration
- the infrastructure.properties file should be created under $CATALINA_HOME/conf :
for EUBrazilOpenBio portal the content should be
infrastructure=d4science.research-infrastructures.eu scopes=EUBrazilOpenBio
- symmetric keys for d4science.research-infrastructures.eu scope and EUBrazilOpenBio should be installed under $GLOBUS_LOCATION , they can be downloaded from http://goo.gl/EKDwqd
- The ResourceRegistry property files bundle have to be downloaded from [1] and unpacked under the $GLOBUS_LOCATION/lib/_ext folder
