Difference between revisions of "EuBrazilOpenBIO VO 2.17.0"

Revision as of 12:13, 18 November 2013

gHN Upgrade Instructions

The upgrade to the latest version of GHNgCube Hosting Node. (v 3.8.1) and gCube (2.17.0) requires Site Manager to apply the following upgrade instructions

Clean and upgrade

• Clean and upgrade to GHNgCube Hosting Node. v 3.8.1 using the following instructions
• upgrade to GHNgCube Hosting Node. v 3.8.1 using the following instructions

EUBrazilOpenBio VOVirtual Organization;

GHNs

GHNgCube Hosting Node. to upgrade following this instructions:

• geoserver.d4science.org:9000
• geoserver2.d4science.org:9000
• geoserver3.d4science.org:9000
• geoserver4.d4science.org:9000
• node77.p.d4science.research-infrastructures.eu:8080
• DONE node34.p.d4science.research-infrastructures.eu:8080

GHNgCube Hosting Node. to clean following this instructions:

• db2.p.d4science.research-infrastructures.eu:8080
• node8.p.d4science.research-infrastructures.eu:8000
• DONE node12.p.d4science.research-infrastructures.eu:8080
• DONE node16.p.d4science.research-infrastructures.eu:8080
• DONE node19.p.d4science.research-infrastructures.eu:8080
• DONE node21.p.d4science.research-infrastructures.eu:8080

• (UPV) gcube01.i3m.upv.es:8080
• (UPV) gcube01.i3m.upv.es:8081
• (UPV) gcube01.i3m.upv.es:8082
• (UPV) gcube01.i3m.upv.es:8083
• (UPV) gcube02.i3m.upv.es:8080
• (UPV) gcube02.i3m.upv.es:8081
• (UPV) gcube02.i3m.upv.es:8082
• (UPV) gcube02.i3m.upv.es:8083
• (UPV) gcube03.i3m.upv.es:8080
• (UPV) gcube03.i3m.upv.es:8081
• (UPV) gcube03.i3m.upv.es:8082
• (UPV) gcube03.i3m.upv.es:8083
• (UPV) gcube04.i3m.upv.es:8080
• (UPV) gcube04.i3m.upv.es:8081
• (UPV) gcube04.i3m.upv.es:8082
• (UPV) gcube04.i3m.upv.es:8083
• (UPV) gcube05.i3m.upv.es:8080
• (UPV) gcube05.i3m.upv.es:8081
• (UPV) gcube05.i3m.upv.es:8082
• (UPV) gcube05.i3m.upv.es:8083
• (UFF) sn10.ic.uff.br:8080

new GHNgCube Hosting Node. to install:

• DONE (CNR) node24.d4science.org:8080

Service Deployment

• db2.p.d4science.research-infrastructures.eu:8080 : deploy SM
• node8.p.d4science.research-infrastructures.eu:8000 : deploy VREModeler
• DONE node12.p.d4science.research-infrastructures.eu:8080 : deploy Personalization
• DONE node16.p.d4science.research-infrastructures.eu:8080 : deploy DataTransformation,ExecutionEngine
• DONE node19.p.d4science.research-infrastructures.eu:8080 : deploy CouchBase, FWIndex
• DONE node21.p.d4science.research-infrastructures.eu:8080 : deploy FTIndex
• DONE node34.p.d4science.research-infrastructures.eu:8080 : updrade OAI-TM plugin
• DONE node24.d4science.org:8080 : deploy Search , ExecutionEngine ( add ghn to SpeciesLab scope)

Portal

GHNgCube Hosting Node. upgrade

• upgrade to GHNgCube Hosting Node. v 3.8.1 using the following instructions

Components installation

Artifact can be downloaded using the following instructions:

• Install Artifact dowloaded tool

svn export  https://svn.d4science.research-infrastructures.eu/gcube/trunk/tools/artifact-downloader/ 

• run the client as follows

mkdir artifacts

./ArtifactDownloader ./2.17.0/list_components  http://grids16.eng.it/BuildReport/bdownload/Recent_Builds/org.gcube.2-17-0/latest/reports/org.gcube-org.gcube.2-17-0-tar.gz.txt ./artifacts http://grids16.eng.it/BuildReport/bdownload/Recent_Builds/org.gcube.2-17-0/latest

Portlets

to Upgrade:

• org.gcube.messaging.accounting-portlet.1-9-0
• org.gcube.messaging.node-accounting-portlet.1-5-0
• org.gcube.data-transfer.scheduler-portlet.2-1-0
• org.gcube.data-transfer.storagemanager-portlet.1-1-0
• org.gcube.portlets-admin.collection-explorer.2-0-0
• org.gcube.portlets-admin.collections-viewer.2-1-0
• org.gcube.portlets-admin.resource-management-portlet.5-1-0
• org.gcube.portlets-admin.runtime-resource-creator.1-4-0
• org.gcube.portlets-admin.vre-definition.4-1-0
• org.gcube.portlets-admin.vre-deployer.3-0-0
• org.gcube.portlets-admin.vre-manager.5-0-0
• org.gcube.portlets-admin.wf-docs-manager.2-1-0
• org.gcube.portlets-admin.wf-roles-editor.1-4-0
• org.gcube.portlets-admin.wf-templates-editor.2-1-0
• org.gcube.portlets-admin.users-management-portlet.1-9-0
• org.gcube.portlets-admin.search-manager-portlet.1-5-0
• org.gcube.portlets-admin.roles-management-portlet.1-6-0
• org.gcube.portlets-admin.ir-bootstrapper-portlet.2-4-0
• org.gcube.portlets-admin.fwd-index-management-portlet.2-1-0
• org.gcube.portlets-admin.ft-index-management-portlet.2-2-0
• org.gcube.portlets-admin.information-space-editor-portlet.2-5-0
• org.gcube.portlets-admin.policy-definition-portlet.2-0-0
• org.gcube.application.aquamaps.aquamapsportlet.3-1-0
• org.gcube.application.aquamaps.aquamapsspeciesview.1-3-0
• org.gcube.application.aquamaps.datamanagementfacilityportlet.1-7-0
• org.gcube.portlets-user.geoexplorer-portlet.2-4-0
• org.gcube.portlets-user.workspace-portlet.6-5-0
• org.gcube.portlets-user.messages.0-4-0
• org.gcube.portlets-user.species-discovery.3-5-0
• org.gcube.portlets-user.xsearch-portlet.1-1-1
• org.gcube.portlets-user.statistical-manager-portlet.1-2-3
• org.gcube.portlets-user.gcube-loggedin-portlet.2-2-0
• org.gcube.portlets-user.gcube-login-portlet.2-0-0
• org.gcube.portlets-user.join-new-environment.1-3-0
• org.gcube.portlets-user.newsfeed.1-4-0
• org.gcube.portlets-user.notifications.1-0-0
• org.gcube.portlets-user.report-generator-portlet.4-5-0
• org.gcube.portlets-user.socialprofile.0-3-0
• org.gcube.portlets-user.template-creator.4-5-0
• org.gcube.portlets-user.wf-documents-portlet.1-5-0
• org.gcube.portlets-user.codelist-management-portlet.1-4-0
• org.gcube.portlets-user.collections-navigator-portlet.2-1-0
• org.gcube.portlets-user.search-portlet.3-2-0
• org.gcube.portlets-user.results-portlet.5-3-0
• org.gcube.portlets-user.user-profile-portlet-new.1-6-0
• org.gcube.portlets-user.occurrence-management.2-0-0
• org.gcube.portlets-user.shareupdates-1-0-0
• org.gcube.portlets-user.myvres.1-0-0
• org.gcube.portlets-user.time-series-charts-portlet.1-6-0 ( from Maven)
• org.gcube.portlets-user.web-application-management-portlet.1-4-0 ( from Maven)
• org.gcube.portlets-user.time-series-portlet.3-5-0 ( from Maven)
• org.gcube.portlets-user.trendylyzer-portlet.1-0-2 (from Maven)

Given the name changes, layouts must also be revised to add the new portlet

new portlet:

• org.gcube.portlets-user.tabular-data-portlet.1-0-0
• org.gcube.portlets-user.iSearch-portlet.0-1-0

to remove cause replaced by mavenized version

• RuntimeResourceCreator-portlet
• aquamapsportlet
• aquamapsspeciesview
• CollectionExplorer
• CollectionsNavigatorPortlet
• datamanagementfacility
• GCubeLogin
• nodeaccountingui
• SearchManagerPortlet
• OccurrenceManagement
• InformationSpaceEditor
• UserProfileEditingPortlet
• WebApplicationManagementPortlet

Libraries

Libraries to upgrade/install under $GLOBUS_LOCATION/lib/_ext

• org.gcube.portal.portal-manager.1-0-0
• org.gcube.portal.custom-portal-handler.1-3-0
• org.gcube.vre-management.resourcemanager-client.1-0-0
• org.gcube.vre-management.vremodeler-client-library.1-0-0
• org.gcube.search.opensearchdatasource-client-library.1-0-0
• org.gcube.application.aquamaps.aquamapsservice-cl.3-0-0
• org.gcube.vre-management.ghnmanager-client.1-0-0
• org.gcube.search.search-client-library.1-0-1
• org.gcube.portlets-widgets.application-news-widget.1-3-0
• org.gcube.portlets-widgets.guided-tour-widget.1-4-0
• org.gcube.portlets-widgets.pickuser-widget.0-4-0
• org.gcube.portlets-widgets.report-exporter-widget.1-1-0
• org.gcube.portlets-widgets.switch-button-widget.1-0-0
• org.gcube.portlets-widgets.user-selection-dialog.1-0-0
• org.gcube.portlets-widgets.wsmail-widget.1-4-0
• org.gcube.portlets-admin.software-upload-wizard.1-2-0
• org.gcube.portlets-admin.resource-sweeper.2-0-0
• org.gcube.portlets-admin.document-workflow-library.1-4-0
• org.gcube.portlets-admin.ishealth-monitor.1-1-0
• org.gcube.portlets-admin.rmp-common-library.2-0-0
• org.gcube.portlets-admin.activation-record-widget.1-2-0
• org.gcube.data-analysis.ecological-engine-external-algorithms.1.1.1
• org.gcube.data-analysis.ecological-geospatial-extensions.1.1.0
• org.gcube.data-analysis.statistical-manager-cl.1.1.3
• org.gcube.portlets-user.GISViewer.3-3-0
• org.gcube.portlets-user.gcube-GISViewer.2-1-0
• org.gcube.portlets-user.geoexplorer.2-5-0
• org.gcube.portlets-user.gcube-geoexplorer.2-5-0
• org.gcube.portlets-user.gcube-reporting-library.3-3-0
• org.gcube.portlets-user.gcube-widgets-library.1-7-0
• org.gcube.portlets-user.codelist-library.1-3-0
• org.gcube.portlets-user.csv-import-wizard.1-2-0
• occurrence-reconciliation.2-0-0
• org.gcube.index-management.forwardindexnode-client-library.1-2-0
• org.gcube.index-management.fulltextindexnode-client-library.1-2-0
• org.gcube.data-transformation.data-transformation-client-library.3-0-0
• org.gcube.execution.RRPlugins.1-0-2
• org.gcube.execution.RRModel.1-5-0
• org.gcube.execution.RRGCubeBridge.1-5-0
• org.gcube.execution.ResourceRegistry.1-4-0
• org.gcube.execution.rrconfprovider-portal.1-0-0 (from Maven)
• gis-interface.2-0-1
• geonetwork.2-0-1
• common-clients-2.1.0
• common-gcore-clients-2.2.0
• common-fw-clients-1.1.0
• org.gcube.messaging.consumer-library.2-1-0
• spd-client-library.3-1-1
• org.gcube.data-transfer.scheduler-library.2-1-0
• org.gcube.content-management.storage-resource-link-plugin.1-1-0
• org.gcube.content-management.storage-manager-core.2.0.3
• org.gcube.vre-management.vremodeler-utils.1-0-0
• org.gcube.portlets-user.csv-import-wizard-workspace-extension.1-2-0 (from Maven)
• org.gcube.data-analysis.statistical-manager-stubs.1-1-4
• org.gcube.portlets-user.codelist-interface.1-1-1 ( from Maven)

Libraries to be upgraded under $GLOBUS_LOCATION/lib/

• registry-publisher-1.2.1

Libraries to be upgraded under $GLOBUS_LOCATION/lib/_social-library/

• org.gcube.portal.social-networking-library.1-4-0

Libraries to be upgraded under $GLOBUS_LOCATION/lib/_home-library

• org.gcube.common.home-library.1-0-0
• org.gcube.common.home-library-jcr.1-0-0
• org.gcube.portlets-user.workspace-application-handler.1-1-0
• org.gcube.portlets-user.workspace-portlet-tree.6-5-0
• org.gucbe.portlets-widgets.workspace-light-tree.2-13-0

Libraries to be upgraded under $GLOBUS_LOCATION/lib/_application-support-layer

• org.gcube.application-support-layer.application-support-layer-core.4-0-0
• org.gcube.application-support-layer.application-support-layer-search.5-0-0
• org.gcube.application-support-layer.application-support-layer-content.6-0-0
• org.gcube.application-support-layer.gcube-search-library.1-2-0
• org.gcube.application-support-layer.social.0-7-1
• org.gcube.application-support-layer.application-support-layer-vremanagement.5-0-0
• org.gcube.application-support-layer.application-support-layer-userprofile.4-0-0

servlet to install uner $CATALINA_HOME/webapp

• org.gcube.application-support-layer.application-support-layer-http-information-retrieval.1-4-0
• org.gcube.application-support-layer.application-support-layer-http-content-access.1-2-0
• org.gcube.application-support-layer.application-support-layer-http-infrastructure-login.1-1-0
• org.gcube.application-support-layer-http-access-management.1-1-0

Libraries to remove from GLOBUS_LOCATION/lib/ext

• org.gcube.tools.sam.reports.jar
• org.gcube.application.aquamaps.aquamapsservice-stubs
• org.gcube.application-support-layer.application-support-layer-oai_ore
• org.gcube.indexmanagement.fulltextindexlookup.stubs.jar
• org.gcube.personalization.profileadministration.stubs.jar
• org.gcube.personalization.userprofileaccess.stubs.jar
• profileadministration-stubs-2.0.0-2.15.0.jar
• searchsystemservice-stubs-2.0.3-2.12.0.jar
• tree-manager-stubs-3.0.0-2.12.0.jar
• userprofileaccess-stubs-3.0.0-2.15.0.jar
• vremodeler-stubs-2.0.1-2.12.0.jar
• opensearchdatasource-stubs-1.6.2-2.15.0.jar
• data-transformation-service-stubs-2.2.3-2.12.0.jar
• aquamapsservice-stubs-4.2.0-2.16.0.jar

Libraries to remove from $GLOBUS_LOCATION/lib/_application-support-layer

• org.gcube.application-support-layer.application-support-layer-oai_pmh

Libraries to remove from $GLOBUS_LOCATION/lib/_home-library

• org.gcube.portlets-user.home-library
• org.gcube.portlets-user.home-library-jcr

External components:

• gwt-fix-2.5.1-gxt2.jar
• gwt-servlet-deps.jar
• gwt-servlet.jar
• gwt-user-2.5.1.jar

Configuration

• the infrastructure.properties file should be created under $CATALINA_HOME/conf :

for EUBrazilOpenBio portal the content should be

infrastructure=d4science.research-infrastructures.eu
scopes=EUBrazilOpenBio

• symmetric keys for d4science.research-infrastructures.eu scope and EUBrazilOpenBio should be installed under $GLOBUS_LOCATION , they can be downloaded from http://goo.gl/EKDwqd

• The ResourceRegistry property files bundle have to be downloaded from [1] and unpacked under the $GLOBUS_LOCATION/lib/_ext folder