Upgrade Plan 217 Ecosystem

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Ecosystem VOVirtual Organization;

gHNs to clean following this instructions

  • DONE (CERN) node13.p.d4science.research-infrastructures.eu:8080
  • DONE (CERN) node22.p.d4science.research-infrastructures.eu:8080
  • DONE (CERN) node31.p.d4science.research-infrastructures.eu:8080
  • DONE (CERN) node51.p.d4science.research-infrastructures.eu:8080 ( added VREVirtual Research Environment. scope to make RR work)
  • DONE (CERN) node56.p.d4science.research-infrastructures.eu:8080
  • DONE (CERN) node57.p.d4science.research-infrastructures.eu:8080
  • DONE (CERN) dl18.di.uoa.gr:8080
  • DONE (CERN) dewn07.madgik.di.uoa.gr:8080
  • DONE (CERN) dl27.di.uoa.gr:8080
  • DONE (CERN) dl28.di.uoa.gr:8080


Services:

  • DONE (CERN) node13.p.d4science.research-infrastructures.eu:8080: upgrade FullTextIndex
  • DONE (CERN) node20.p.d4science.research-infrastructures.eu:8080: upgrade OAI plugin (http://mirror.switch.ch/mirror/apache/dist//httpcomponents/httpclient/binary/httpcomponents-client-4.3.1-bin.tar.gz and axiom-api/axiom-impl, axis2core)
  • DONE (CERN) node22.p.d4science.research-infrastructures.eu:8080: uppgrade personalizaion and VREMOdeler
  • DONE (CERN) node31.p.d4science.research-infrastructures.eu:8080: upgrade DTS + execution
  • DONE (CERN) node51.p.d4science.research-infrastructures.eu:8080: upgrade Search and Execution
  • DONE (CERN) node57.p.d4science.research-infrastructures.eu:8080: deploy WorkflowEngine, WorkflowOrchestratonService
  • DONE (CERN) dewn07.madgik.di.uoa.gr:8080: upgrade FW index
  • (CERN) dl18.di.uoa.gr:8080:deploy SPD
  • DONE (CERN) dl27.di.uoa.gr:8080 : deploy StatisticalManager
  • DONE (CERN) dl28.di.uoa.gr:8080 : deploy Executor, Generic Worker

newportal

GHNgCube Hosting Node. upgrade

  • upgrade to GHNgCube Hosting Node. v 3.8.1 using the following instructions

Components installation

Artifact can be downloaded using the following instructions:

  • Install Artifact dowloaded tool
svn export  https://svn.d4science.research-infrastructures.eu/gcube/trunk/tools/artifact-downloader/
  • run the client as follows
mkdir artifacts

./ArtifactDownloader ./2.17.0/list_components  http://grids16.eng.it/BuildReport/bdownload/Recent_Builds/org.gcube.2-17-0/latest/reports/org.gcube-org.gcube.2-17-0-tar.gz.txt ./artifacts http://grids16.eng.it/BuildReport/bdownload/Recent_Builds/org.gcube.2-17-0/latest

Portlets

to Upgrade:

  • DONE org.gcube.messaging.accounting-portlet.1-9-0
  • DONE org.gcube.messaging.node-accounting-portlet.1-5-0 ( to check)
  • DONE org.gcube.data-transfer.scheduler-portlet.2-1-0
  • DONE org.gcube.data-transfer.storagemanager-portlet.1-1-0
  • DONE org.gcube.portlets-admin.collection-explorer.2-0-0
  • DONE org.gcube.portlets-admin.collections-viewer.2-1-0
  • DONE org.gcube.portlets-admin.resource-management-portlet.5-1-0
  • DONE org.gcube.portlets-admin.runtime-resource-creator.1-4-0
  • DONE org.gcube.portlets-admin.vre-definition.4-1-0
  • DONE org.gcube.portlets-admin.vre-deployer.3-0-0
  • DONE org.gcube.portlets-admin.vre-manager.5-0-0
  • DONE org.gcube.portlets-admin.wf-docs-manager.2-1-0
  • DONE org.gcube.portlets-admin.wf-roles-editor.1-4-0
  • DONE org.gcube.portlets-admin.wf-templates-editor.2-1-0
  • DONE org.gcube.portlets-admin.users-management-portlet.1-9-0
  • DONE org.gcube.portlets-admin.search-manager-portlet.1-5-0
  • DONE org.gcube.portlets-admin.roles-management-portlet.1-6-0
  • DONE org.gcube.portlets-admin.ir-bootstrapper-portlet.2-4-0
  • DONE org.gcube.portlets-admin.fwd-index-management-portlet.2-1-0
  • DONE org.gcube.portlets-admin.ft-index-management-portlet.2-2-0
  • DONE org.gcube.portlets-admin.information-space-editor-portlet.2-5-0
  • DONE org.gcube.portlets-admin.policy-definition-portlet.2-0-0
  • DONE org.gcube.application.aquamaps.aquamapsportlet.3-1-0 ( to check)
  • DONE org.gcube.application.aquamaps.aquamapsspeciesview.1-3-0 ( to check)
  • DONE org.gcube.application.aquamaps.datamanagementfacilityportlet.1-7-0
  • DONE org.gcube.portlets-user.time-series-portlet.3-5-0 ( from Maven)
  • DONE org.gcube.portlets-user.geoexplorer-portlet.2-4-0 ( to check)
  • DONE org.gcube.portlets-user.workspace-portlet.6-5-0
  • DONE org.gcube.portlets-user.messages.0-4-0
  • DONE org.gcube.portlets-user.species-discovery.3-5-0
  • DONE org.gcube.portlets-user.xsearch-portlet.1-1-1
  • DONE org.gcube.portlets-user.trendylyzer-portlet.1-0-2 (from Maven)
  • DONE org.gcube.portlets-user.statistical-manager-portlet.1-2-3 ( to check)
  • DONE org.gcube.portlets-user.gcube-loggedin-portlet.2-2-0
  • DONE org.gcube.portlets-user.gcube-login-portlet.2-0-0
  • DONE org.gcube.portlets-user.join-new-environment.1-3-0
  • DONE org.gcube.portlets-user.newsfeed.1-4-0
  • DONE org.gcube.portlets-user.notifications.1-0-0
  • DONE org.gcube.portlets-user.report-generator-portlet.4-5-0
  • DONE org.gcube.portlets-user.socialprofile.0-3-0
  • DONE org.gcube.portlets-user.template-creator.4-5-0
  • DONE org.gcube.portlets-user.wf-documents-portlet.1-5-0
  • DONE org.gcube.portlets-user.time-series-charts-portlet.1-6-0 ( from Maven)
  • DONE org.gcube.portlets-user.web-application-management-portlet.1-4-0 ( from Maven)
  • DONE org.gcube.portlets-user.codelist-management-portlet.1-4-0
  • DONE org.gcube.portlets-user.collections-navigator-portlet.2-1-0
  • DONE org.gcube.portlets-user.search-portlet.3-2-0
  • DONE org.gcube.portlets-user.results-portlet.5-3-0
  • DONE org.gcube.portlets-user.user-profile-portlet-new.1-6-0
  • DONE org.gcube.portlets-user.occurrence-management.2-0-0
  • DONE org.gcube.portlets-user.shareupdates-1-0-0
  • DONE org.gcube.portlets-user.myvres.1-0-0


Given the name changes, layouts must also be revised to add the new portlet

new portlet:

  • DONE org.gcube.portlets-user.tabular-data-portlet.1-0-0
  • DONE org.gcube.portlets-user.iSearch-portlet.0-1-0


to remove cause replaced by mavenized version

  • RuntimeResourceCreator-portlet
  • aquamapsportlet
  • aquamapsspeciesview
  • CollectionExplorer
  • CollectionsNavigatorPortlet
  • datamanagementfacility
  • GCubeLogin
  • nodeaccountingui
  • SearchManagerPortlet
  • OccurrenceManagement
  • InformationSpaceEditor
  • UserProfileEditingPortlet
  • WebApplicationManagementPortlet

Libraries

Libraries to upgrade/install under $GLOBUS_LOCATION/lib/_ext

  • DONE org.gcube.portal.portal-manager.1-0-0
  • DONE org.gcube.portal.custom-portal-handler.1-3-0
  • DONE org.gcube.vre-management.resourcemanager-client.1-0-0
  • DONE org.gcube.vre-management.vremodeler-client-library.1-0-0
  • DONE org.gcube.search.opensearchdatasource-client-library.1-0-0
  • DONE org.gcube.application.aquamaps.aquamapsservice-cl.3-0-0
  • DONE org.gcube.vre-management.ghnmanager-client.1-0-0
  • DONE org.gcube.search.search-client-library.1-0-1
  • DONE org.gcube.portlets-widgets.application-news-widget.1-3-0
  • DONE org.gcube.portlets-widgets.guided-tour-widget.1-4-0
  • DONE org.gcube.portlets-widgets.pickuser-widget.0-4-0
  • DONE org.gcube.portlets-widgets.report-exporter-widget.1-1-0
  • DONE org.gcube.portlets-widgets.switch-button-widget.1-0-0
  • DONE org.gcube.portlets-widgets.user-selection-dialog.1-0-0
  • DONE org.gcube.portlets-widgets.wsmail-widget.1-4-0
  • DONE org.gcube.portlets-admin.software-upload-wizard.1-2-0
  • DONE org.gcube.portlets-admin.resource-sweeper.2-0-0
  • DONE org.gcube.portlets-admin.document-workflow-library.1-4-0
  • DONE org.gcube.portlets-admin.ishealth-monitor.1-1-0
  • DONE org.gcube.portlets-admin.rmp-common-library.2-0-0
  • DONE org.gcube.portlets-admin.activation-record-widget.1-2-0
  • DONE org.gcube.data-analysis.ecological-engine.1.7.1
  • DONE org.gcube.data-analysis.ecological-engine-external-algorithms.1.1.1
  • DONE org.gcube.data-analysis.ecological-geospatial-extensions.1.1.0
  • DONE org.gcube.data-analysis.statistical-manager-cl.1.1.3
  • DONE org.gcube.portlets-user.GISViewer.3-3-0
  • DONE org.gcube.portlets-user.gcube-GISViewer.2-1-0
  • DONE org.gcube.portlets-user.geoexplorer.2-5-0
  • DONE org.gcube.portlets-user.gcube-geoexplorer.2-5-0
  • DONE org.gcube.portlets-user.gcube-reporting-library.3-3-0
  • DONE org.gcube.portlets-user.gcube-widgets-library.1-7-0
  • DONE org.gcube.portlets-user.codelist-library.1-3-0
  • DONE org.gcube.portlets-user.csv-import-wizard.1-2-0
  • DONE occurrence-reconciliation.2-0-0
  • DONE org.gcube.index-management.forwardindexnode-client-library.1-2-0
  • DONE org.gcube.index-management.fulltextindexnode-client-library.1-2-0
  • DONE org.gcube.data-transformation.data-transformation-client-library.3-0-0
  • DONE org.gcube.execution.RRPlugins.1-0-2
  • DONE org.gcube.execution.RRModel.1-5-0
  • DONE org.gcube.execution.RRGCubeBridge.1-5-0
  • DONE org.gcube.execution.ResourceRegistry.1-4-0
  • DONE org.gcube.execution.resourceregistry-configuration-vo-nonupdaters.1-0-0
  • DONE org.gcube.execution.rrconfprovider-portal.1-0-0 (from Maven)
  • DONE gis-interface.2-0-1
  • DONE geonetwork.2-0-1
  • DONE common-clients-2.1.0
  • DONE common-gcore-clients-2.2.0
  • DONE common-fw-clients-1.1.0
  • DONE org.gcube.messaging.consumer-library.2-1-0
  • DONE spd-client-library.3-1-1
  • DONE org.gcube.data-transfer.scheduler-library.2-1-0
  • org.gcube.content-management.storage-resource-link-plugin.1-1-0
  • DONE org.gcube.content-management.storage-manager-core.2.0.3
  • DONE org.gcube.vre-management.vremodeler-utils.1-0-0
  • org.gcube.portlets-user.csv-import-wizard-workspace-extension.1-2-0 (from Maven)
  • DONEorg.gcube.data-analysis.statistical-manager-stubs.1-1-4
  • DONE org.gcube.portlets-user.codelist-interface.1-1-1 ( from Maven)

Libraries to be upgraded under $GLOBUS_LOCATION/lib/

  • common-gcore-resources-1.2.0 ( from Maven)
  • registry-publisher-1.2.1


Libraries to be upgraded under $GLOBUS_LOCATION/lib/_social-library/ (DONE)

  • org.gcube.portal.social-networking-library.1-4-0


Libraries to be upgraded under $GLOBUS_LOCATION/lib/_home-library (DONE)

  • org.gcube.common.home-library.1-0-0
  • org.gcube.common.home-library-jcr.1-0-0
  • org.gcube.portlets-user.workspace-application-handler.1-1-0
  • org.gcube.portlets-user.workspace-portlet-tree.6-5-0
  • org.gucbe.portlets-widgets.workspace-light-tree.2-13-0


Libraries to be upgraded under $GLOBUS_LOCATION/lib/_application-support-layer (DONE)

  • org.gcube.application-support-layer.application-support-layer-core.4-0-0
  • org.gcube.application-support-layer.application-support-layer-search.5-0-0
  • org.gcube.application-support-layer.application-support-layer-content.6-0-0
  • org.gcube.application-support-layer.gcube-search-library.1-2-0
  • org.gcube.application-support-layer.social.0-7-1
  • org.gcube.application-support-layer.application-support-layer-vremanagement.5-0-0
  • org.gcube.application-support-layer.application-support-layer-userprofile.4-0-0

servlet to install uner $CATALINA_HOME/webapp

  • org.gcube.application-support-layer.application-support-layer-http-information-retrieval.1-4-0
  • org.gcube.application-support-layer.application-support-layer-http-content-access.1-2-0
  • org.gcube.application-support-layer.application-support-layer-http-infrastructure-login.1-1-0
  • org.gcube.application-support-layer-http-access-management.1-1-0
  • org.gcube.application.aquamaps.images.1-2-0


Libraries to remove from GLOBUS_LOCATION/lib/ext (DONE)

  • org.gcube.tools.sam.reports.jar
  • org.gcube.application.aquamaps.aquamapsservice-stubs
  • org.gcube.application-support-layer.application-support-layer-oai_ore
  • org.gcube.indexmanagement.fulltextindexlookup.stubs.jar
  • org.gcube.personalization.profileadministration.stubs.jar
  • org.gcube.personalization.userprofileaccess.stubs.jar
  • profileadministration-stubs-2.0.0-2.15.0.jar
  • searchsystemservice-stubs-2.0.3-2.12.0.jar
  • tree-manager-stubs-3.0.0-2.12.0.jar
  • userprofileaccess-stubs-3.0.0-2.15.0.jar
  • vremodeler-stubs-2.0.1-2.12.0.jar
  • opensearchdatasource-stubs-1.6.2-2.15.0.jar
  • data-transformation-service-stubs-2.2.3-2.12.0.jar
  • aquamapsservice-stubs-4.2.0-2.16.0.jar


Libraries to remove from $GLOBUS_LOCATION/lib/_application-support-layer (DONE)

  • org.gcube.application-support-layer.application-support-layer-oai_pmh

Libraries to remove from $GLOBUS_LOCATION/lib/_home-library (DONE)

  • org.gcube.portlets-user.home-library
  • org.gcube.portlets-user.home-library-jcr


External components: (DONE)

  • gwt-fix-2.5.1-gxt2.jar
  • gwt-servlet-deps.jar
  • gwt-servlet.jar
  • gwt-user-2.5.1.jar

Configuration

  1. the infrastructure.properties file should be created under $CATALINA_HOME/conf with the following content:


infrastructure=d4science.research-infrastructures.eu
scopes=Ecosystem
  1. symmetric keys for d4science.research-infrastructures.eu scope and Ecosystem should be installed under $GLOBUS_LOCATION
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