Difference between revisions of "EuBrazilOpenBIO VO 2.16.0"

Latest revision as of 16:06, 1 August 2013

gHN Upgrade Instructions

The upgrade to the latest version of GHNgCube Hosting Node. (v 3.8.0) and gCube (2.16.0) requires Site Manager to apply the following upgrade instructions

Clean and upgrade

• Clean and upgrade to GHNgCube Hosting Node. v 3.8.0 using the following instructions
• upgrade to GHNgCube Hosting Node. v 3.8.0 using the following instructions

EUBrazilOpenBio VOVirtual Organization;

GHNs

GHNgCube Hosting Node. to upgrade following this instructions:

• DONE db2.p.d4science.research-infrastructures.eu:8080
• DONE geoserver.d4science-ii.research-infrastructures.eu:9000
• DONE geoserver2.d4science.research-infrastructures.eu:9000
• DONE geoserver3.d4science.research-infrastructures.eu:9000
• DONE geoserver4.d4science.research-infrastructures.eu:9000
• (UPV) gcube01.i3m.upv.es:8080
• (UPV) gcube01.i3m.upv.es:8081
• (UPV) gcube01.i3m.upv.es:8082
• (UPV) gcube01.i3m.upv.es:8083
• (UPV) gcube02.i3m.upv.es:8080
• (UPV) gcube02.i3m.upv.es:8081
• (UPV) gcube02.i3m.upv.es:8082
• (UPV) gcube02.i3m.upv.es:8083
• (UPV) gcube03.i3m.upv.es:8080
• (UPV) gcube03.i3m.upv.es:8081
• (UPV) gcube03.i3m.upv.es:8082
• (UPV) gcube03.i3m.upv.es:8083
• (UPV) gcube04.i3m.upv.es:8080
• (UPV) gcube04.i3m.upv.es:8081
• (UPV) gcube04.i3m.upv.es:8082
• (UPV) gcube04.i3m.upv.es:8083
• (UPV) gcube05.i3m.upv.es:8080
• (UPV) gcube05.i3m.upv.es:8081
• (UPV) gcube05.i3m.upv.es:8082
• (UPV) gcube05.i3m.upv.es:8083
• (UFF) sn10.ic.uff.br:8080

GHNgCube Hosting Node. to clean following this instructions:

• DONE node8.p.d4science.research-infrastructures.eu:8000
• DONE node12.p.d4science.research-infrastructures.eu:8080
• DONE node16.p.d4science.research-infrastructures.eu:8080
• DONE node19.p.d4science.research-infrastructures.eu:8080
• DONE node21.p.d4science.research-infrastructures.eu:8080
• DONE node34.p.d4science.research-infrastructures.eu:8080
• DONE node77.p.d4science.research-infrastructures.eu:8080

Service Deployment

• DONE db2.p.d4science.research-infrastructures.eu:8080 : upgrade EcologicalEngine
• (CNR) node8.p.d4science.research-infrastructures.eu:8000 : deploy VREModeler, Personalization
• DONE node16.p.d4science.research-infrastructures.eu:8080 : deploy DataTransformation,ExecutionEngine
• (CNR) node19.p.d4science.research-infrastructures.eu:8080 : deploy CouchBase, FWIndex
• (CNR) node21.p.d4science.research-infrastructures.eu:8080 : deploy FTIndex
• DONE (CNR) node34.p.d4science.research-infrastructures.eu:8080 : deploy TM and plugins
• DONE (CNR) node77.p.d4science.research-infrastructures.eu:8080 ; deploy SPD and plugins

Portal

GHNgCube Hosting Node. upgrade

• upgrade to GHNgCube Hosting Node. v 3.8.0 using the following instructions

Components installation

Artifact can be downloaded using the following instructions:

• Install Artifact dowloaded tool

svn export  https://svn.d4science.research-infrastructures.eu/gcube/trunk/tools/artifact-downloader/ 

• run the client as follows

mkdir artifacts

./ArtifactDownloader ./2.16.0/list_components  http://grids16.eng.it/BuildReport/bdownload/Recent_Builds/org.gcube.2-16-0/latest/reports/org.gcube-org.gcube.2-16-0-tar.gz.txt./artifacts http://grids16.eng.it/BuildReport/bdownload/Recent_Builds/org.gcube.2-16-0/latest

Portlets

to Upgrade:

• org.gcube.data-transfer.scheduler-portlet.2-0-0
• org.gcube.portlets-admin.ir-bootstrapper-portlet.2-3-0
• org.gcube.portlets-admin.users-management-portlet.1-8-2
• org.gcube.portlets-admin.collection-explorer.1-6-0
• org.gcube.portlets-admin.collections-viewer.2-0-0
• org.gcube.portlets-user.geoexplorer-portlet.2-2-0
• org.gcube.portlets-user.workspace-portlet.6-3-0
• org.gcube.portlets-user.messages.0-3-0
• org.gcube.portlets-user.species-discovery.3-3-0
• org.gcube.portlets-user.xsearch-portlet.1-1-0
• org.gcube.portlets-user.search-portlet.3-1-0
• org.gcube.portlets-user.results-portlet.5-2-0
• org.gcube.portlets-user.shareupdates.0-5-0
• org.gcube.portlets-user.notifications.0-4-0
• org.gcube.portlets-user.newsfeed-1-1-0
• org.gcube.application.aquamaps.aquamapsportlet.3-0-2
• org.gcube.application.aquamaps.aquamapsspeciesview.1-2-2
• org.gcube.application.aquamaps.datamanagementfacilityportlet.1-6-2
• org.gcube.portlets-user.report-generator-portlet.4-4-0
• org.gcube.portlets-user.template-creator.4-4-0
• org.gcube.portlets-user.time-series-portlet.3-4-2
• org.gcube.portlets-admin.wf-roles-editor.1-3-0
• org.gcube.portlets-user.socialprofile.0-2-0
• org.gcube.portlets-admin.information-space-editor-portlet.2-4-0
• org.gcube.portlets-user.join-new-environment-1-2-0

Given the name changes, layouts must also be revised to add the new portlet

new portlet:

• org.gcube.portlets-user.trendylyzer-portlet.1-0-0

to remove:

• Task-manager
• Datatransformation-admin-portlet
• geo-index-management-portlet
• AnnotationsPortlet
• VREVirtual Research Environment.-Deployer
• ContentViewerPortlet
• applicationSupportLayerHttp

the following portlet need also to be reinstalled because of changes on workspace-light-tree

• org.gcube.portlets-user.codelist-management-portlet
• org.gcube.portlets-admin.wf-docs-manager
• org.gcube.portlets-user.occurrence-management

Openbio specific portlets:

• ENM portlet
• Cross Mapping

Libraries

Libraries to be upgraded under $GLOBUS_LOCATION/lib/_ext

• org.gcube.data-analysis.ecological-engine.1.7.0
• org.gcube.common.GeoServerInterface.1-10-2
• org.gcube.data-transfer.agent-library.2-0-0
• org.gcube.data-transfer.scheduler-library.2-0-0
• org.gcube.data-transfer.common.2-0-0
• org.gcube.execution.RRModel.1-4-1
• org.gcube.execution.ResourceRegistry.1-3-5
• org.gcube.content-management.storage-manager-wrapper.2.0.2
• org.gcube.content-management.storage-manager-core.2.0.2
• org.gcube.portlets-user.GISViewer.3-1-1
• org.gcube.portlets-user.geoexplorer.2-3-0
• org.gcube.portlets-user.gcube-geoexplorer.2-3-0
• org.gcube.portlets-user.wsmail-widget.1-2-0
• org.gcube.application.aquamaps.aquamapsservice-cl.2-0-0
• org.gcube.application.aquamaps.aquamapsservice-stubs.4-2-0
• org.gcube.index-management.forwardindexnode-stubs
• org.gcube.index-management.fulltextindexnode-stubs

• spd-client-library.3-1-0
• spd-model-library.2-1-0
• spd-plugin-framework.2-3-0
• spql-parser.2-1-0

Libraries to be upgraded under $GLOBUS_LOCATION/lib/_social-library/

• org.gcube.portal.social-networking-library.1-3-0

Libraries to be upgraded under $GLOBUS_LOCATION/lib/_home-library

• org.gcube.portlets-user.home-library.4-6-0
• org.gcube.portlets-user.home-library-jcr.1-6-0
• org.gcube.portlets-user.workspace-portlet-tree.6-3-0
• org.gcube.portlets-user.workspace-portlet-lighttree.2-10-0

Libraries to be upgraded under $GLOBUS_LOCATION/lib/_application-support-layer

• org.gcube.application-support-layer.application-support-layer-oai_ore.1-1-0
• org.gcube.application-support-layer.application-support-layer-core.3-4-0
• org.gcube.application-support-layer.application-support-layer-search.4-1-0
• org.gcube.application-support-layer.application-support-layer-content.5-1-0
• org.gcube.application-support-layer.social.0-5-0

libs to remove from GLOBUS_LOCATION/lib/ext

• org.gcube.dir.master.stubs.jar
• org.gcube.indexmanagement.forwardindexlookup.stubs.jar
• org.gcube.indexmanagement.forwardindexmanagement.stubs.jar
• org.gcube.indexmanagement.forwardindexupdater.stubs.jar
• org.gcube.indexmanagement.fulltextindexmanagement.stubs.jar
• org.gcube.indexmanagement.fulltextindexupdater.stubs.jar
• org.gcube.indexmanagement.geoindexlookup.stubs.jar
• org.gcube.indexmanagement.geoindexmanagement.stubs.jar
• org.gcube.indexmanagement.geoindexupdater.stubs.jar
• org.gcube.indexmanagement.incrementalindexupdater.stubs.jar
• org.gcube.contentmanagement.storagelayer.storagemanagementservice.stubs.jar
• viewmanager-stubs-1.1.0-2.13.0.jar
• gcubedocumentlibrary-2.1.0-2.13.0.jar
• gcubemodellibrary-2.1.1-2.13.0.jar
• contentmanagementlibrary-1.7.0-2.13.0.jar
• contentmanager-stubs-2.4.0-2.13.0.jar
• iscrawler-1.5.0-2.14.0.jar

Libraries to remove from $GLOBUS_LOCATION/lib/_application-support-layer

• org.gcube.application-support-layer.application-support-layer-storagemanagement

External components:

• nekohtml-1.9.6.2.jar

Configuration

• ASL Search requires a new configuration file : $CARTALINA_HOME/conf/excluded_fields.properties
• containing : excluded_browsable_field_names=gDocCollectionLang,gDocCollectionID

• New configuration for mail notifications to be included in the file: $CATALINA_HOME/conf/gcube-data.properties
  • for iMarine portal : portalinstancename=iMarine Gateway
  • for D4ScienceAn e-Infrastructure operated by the D4Science.org initiative..org portal : portalinstancename=D4ScienceAn e-Infrastructure operated by the D4Science.org initiative..org Gateway

The following tabs should be removed from the layouts:

• GeoIndex
• DataTransformation
• Annotation ( hidden)