View source for 24.04.2014 BiolDiv

'''Meeting 24 April 2014, 10:00 am'''

Google Hangout

'''Present:''' Fabio, Nicolas, Casey, Edward, Anton, Gianpaolo



=Notes=

==BiOnym paper==
* Review of various papers collected by Edward and Anton.

In particular Boyle et al. 2013 in BMC Bioinformatics about a taxon nema matching they developed for plants.

Apparently a mix between the GNI parser, and the Tony's Taxamatch. To explore if there are improvements over Taxamatch or if it is only an effect of linking GNI parser + Taxamatch.

* Finish section 2 and 5 for the next week call (Edward, Nicolas, Fabio).

* Comparison with same systems in other domain, e.g., vessel names.

* GP to modify section 3 and 4.

* Intro of section 3.5: It is the restricted matching running process workflow, not the overall BiOnym conceptual workflow, so can be kept here.

* Complete the point 5.6 in the discussion about how we evaluated the performance (Edward). But still to evaluate if not better in 4.4.

* Discussion on details of reporting (to complete if necessary).

* Section 4: 3 paragraphs as section 3.4 (GP or Edward).

* Should we move the paragraph on parser comparison to discussion? To be evaluated (Fabio).

==User Interface==
* Machine set up in CNR but there is an issue about MySQL 5.6 comparatively to 5.5. Should be running on Friday 25.

* Is it Apache or TomCat? Casey has to explore what is the best. CNR will install Apache, and explore if TomCat can be also on the same machine.

=Next meetings=
Friday 02 May 2014, 10:00 am European time.